View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_78 (Length: 205)
Name: NF14289_high_78
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_78 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33866801 - 33866971
Alignment:
| Q |
17 |
catagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttctt |
116 |
Q |
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| T |
33866801 |
catagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttctt |
33866900 |
T |
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| Q |
117 |
aaattggtgatttacatggtttaa-nnnnnnnncatccattatgagtatagtgtagtattttggttcattg |
186 |
Q |
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| T |
33866901 |
aaattggtgatttacatgttttaatttttttttcattcattatgagtatagtgtagtattttggttcattg |
33866971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 5771251 - 5771081
Alignment:
| Q |
17 |
catagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5771251 |
catagaggaggtaaatccttcaatgagaggtaacgtttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttctt |
5771152 |
T |
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| Q |
117 |
aaattggtgatttacatggtttaa-nnnnnnnncatccattatgagtatagtgtagtattttggttcattg |
186 |
Q |
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| T |
5771151 |
aaattggtgatttacatgttttaatttttttttcattcattatgagtatagtgtagtattttggttcattg |
5771081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 5894561 - 5894501
Alignment:
| Q |
82 |
cttcaataatttagttgtgtattctta--tctttcttaaattggtgatttacatggtttaa |
140 |
Q |
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|||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||||| |
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| T |
5894561 |
cttcaataatttaggtgtgtattcttatctctctcttaaattggtgatatacacggtttaa |
5894501 |
T |
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