View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_9 (Length: 623)

Name: NF14289_high_9
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_9
NF14289_high_9
[»] chr1 (12 HSPs)
chr1 (14-609)||(5934130-5934725)
chr1 (165-461)||(5935977-5936270)
chr1 (47-93)||(28832164-28832210)
chr1 (47-91)||(32560997-32561041)
chr1 (52-91)||(14880852-14880891)
chr1 (57-91)||(7803429-7803463)
chr1 (47-91)||(2994782-2994826)
chr1 (45-93)||(12268975-12269023)
chr1 (47-91)||(16580792-16580836)
chr1 (51-91)||(22335382-22335422)
chr1 (47-91)||(34632193-34632237)
chr1 (47-91)||(36467018-36467062)
[»] chr7 (5 HSPs)
chr7 (47-95)||(16971016-16971064)
chr7 (47-91)||(21136855-21136898)
chr7 (47-93)||(47663376-47663422)
chr7 (47-91)||(41029296-41029340)
chr7 (58-94)||(41250051-41250087)
[»] chr6 (4 HSPs)
chr6 (47-91)||(5604610-5604654)
chr6 (47-91)||(14049877-14049921)
chr6 (47-91)||(20744162-20744206)
chr6 (57-93)||(34701169-34701205)
[»] chr5 (4 HSPs)
chr5 (47-91)||(19647501-19647545)
chr5 (45-93)||(12218276-12218324)
chr5 (44-84)||(24408526-24408566)
chr5 (55-91)||(40446007-40446043)
[»] chr4 (6 HSPs)
chr4 (47-91)||(22630353-22630397)
chr4 (47-91)||(37930840-37930884)
chr4 (47-89)||(6610289-6610331)
chr4 (57-93)||(42344621-42344657)
chr4 (47-91)||(43034335-43034379)
chr4 (51-91)||(48067157-48067197)
[»] chr2 (4 HSPs)
chr2 (57-123)||(690781-690846)
chr2 (47-90)||(12303604-12303647)
chr2 (47-93)||(11790327-11790373)
chr2 (47-91)||(4138015-4138059)
[»] scaffold0314 (2 HSPs)
scaffold0314 (44-91)||(863-910)
scaffold0314 (44-91)||(4372-4419)
[»] chr3 (5 HSPs)
chr3 (57-91)||(1456543-1456577)
chr3 (47-84)||(38798891-38798928)
chr3 (47-91)||(8075809-8075853)
chr3 (47-91)||(25727960-25728004)
chr3 (57-93)||(28430568-28430604)
[»] scaffold0334 (1 HSPs)
scaffold0334 (47-122)||(5176-5250)
[»] chr8 (4 HSPs)
chr8 (50-91)||(34461783-34461824)
chr8 (49-123)||(7204862-7204935)
chr8 (47-91)||(27571842-27571886)
chr8 (47-91)||(32944833-32944877)


Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 14 - 609
Target Start/End: Complemental strand, 5934725 - 5934130
Alignment:
Q  14 ataggtaattttgggtatatatcnnnnnnngtagtggtcgggatttgaacctcagaccttgcaaatattatacattgttctactaacagtgagctaaact 113  Q
    |||||||||||| ||||||||||       ||||||| || | ||||||||||||||| | ||||||||||||||||| | ||||||||||| |||||||    
T  5934725 ataggtaatttttggtatatatctttttttgtagtggccgaggtttgaacctcagaccatacaaatattatacattgtcccactaacagtgaactaaact 5934626  T
Q  114 cacaaggactatgagtctatatctaatctaataaaactaaaacttggacgcgatcattactactaattcttggactctaaccatgctaagacataatcaa 213  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934625 cacaaggactttgggtctatatctaatctaataaaactaaaacttggacgcgatcattactactaattcttggactctaaccatgctaagacataatcaa 5934526  T
Q  214 caacagaatcaatctcttccctgctgatttttccatcacggttggtgtcaacttttctaagacaacaaaaggctctccaacaagtattcctcgaaccaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934525 caacagaatcaatctcttccctgctgatttttccatcacggttggtgtcaatttttctaagacaacaaaaggctctccaacaagtattcctcgaaccaaa 5934426  T
Q  314 ttccttgaaagctttctcaagctcacctttgctcaagctaccatctccatttcgacctgctttcatcaatatatcccttacttgcttttctgtcatggct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934425 ttccttgaaagctttctcaagctcacctttgctcaagctaccatctccatttcgacctgctttcatcaatatatcccttacttgcttttctgtcatggct 5934326  T
Q  414 atgttttgtggcagacccttcaacttgaactgatctggctctctaactctaactatagggatgtagacaatcattttatcttatatgtactgtgttattt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934325 atgttttgtggcagacccttcaacttgaactgatctggctctctaactctaactatagggatgtagacaatcattttatcttatatgtactgtgttattt 5934226  T
Q  514 actctctctaagctaggctgggatatggttttggaaatgccaaatttatatactaacaaaaaggagttaagattatgttctccatatcttcttcct 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934225 actctctctaagctaggctgggatatggttttggaaatgccaaatttatatactaacaaaaaggagttaagattatgttctccatatcttcttcct 5934130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 165 - 461
Target Start/End: Complemental strand, 5936270 - 5935977
Alignment:
Q  165 gatcattactactaattcttggactctaaccatgctaagacataatcaacaacagaatcaatctcttccctgctgatttttccatcacggttggtgtcaa 264  Q
    |||| ||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||| ||||| ||||    
T  5936270 gatctttactactaattcttagactctaaccaaactaagacataatcaacaacaaaatcaatttcatccctactgatttttccatcacgattggtatcaa 5936171  T
Q  265 cttttctaagacaacaaaaggctctccaacaagtattcctcgaaccaaattccttgaaagctttctcaagctcacctttgctcaagctaccatctccatt 364  Q
    ||||||||||||||||| | |||||||||||||   |||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||     
T  5936170 cttttctaagacaacaagaagctctccaacaaggcatcctcgaaccaaattccttgaaagctttcttaagctcatctttgctcaaacaaccatctccatc 5936071  T
Q  365 tcgacctgctttcatcaatatatcccttacttgcttttctgtcatggctatgttttgtggcagacccttcaacttgaactgatctggctctctaact 461  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  5936070 tcgatctgctttcatcaatataccccttatttgcttttctgtcatggctatgttttgtggcagacccttcaacttgaac---tctggctctctaact 5935977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 28832164 - 28832210
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 93  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28832164 gtggtcgggatttgaacctcagaccttgcatatattatgcattgttc 28832210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 32561041 - 32560997
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||    
T  32561041 gtggtcgggatttgaaccccggaccttgcatatattatacattgt 32560997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 14880891 - 14880852
Alignment:
Q  52 cgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  14880891 cgggatttgaacctcagaccttgcatatattatgcattgt 14880852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 7803463 - 7803429
Alignment:
Q  57 tttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  7803463 tttgaacctcagaccttgcatatattatacattgt 7803429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 2994826 - 2994782
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||    
T  2994826 gtggtcggggtttgaaccccggaccttgcatatattatacattgt 2994782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 12268975 - 12269023
Alignment:
Q  45 tagtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 93  Q
    ||||||||||| |||||||| | ||||||||| ||||||| ||||||||    
T  12268975 tagtggtcggggtttgaaccccggaccttgcatatattatgcattgttc 12269023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 16580792 - 16580836
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  16580792 gtggttgggattcgaaccccagaccttgcatatattatacattgt 16580836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 22335422 - 22335382
Alignment:
Q  51 tcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||| |||||||||||||||||||| ||||||| ||||||    
T  22335422 tcggggtttgaacctcagaccttgcatatattatgcattgt 22335382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 34632237 - 34632193
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||| ||||||||||||||| || |||||| ||||||||||||||    
T  34632237 gtggccgggatttgaacctcggatcttgcatatattatacattgt 34632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 36467018 - 36467062
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||||||||||||| | |||||||| ||||||| ||||||    
T  36467018 gtggtcgggatttgaaccttataccttgcatatattatgcattgt 36467062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 16971064 - 16971016
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttcta 95  Q
    ||||||||| |||||| |||||||||| || ||||||||||||||||||    
T  16971064 gtggtcggggtttgaatctcagaccttacatatattatacattgttcta 16971016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 21136898 - 21136855
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  21136898 gtggtcgggatttgaacctca-accttgcatatattatacattgt 21136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 47663376 - 47663422
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 93  Q
    ||||||||| ||||||| |||||||||| | ||||||||||||||||    
T  47663376 gtggtcggggtttgaacttcagaccttgtatatattatacattgttc 47663422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 41029340 - 41029296
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||| ||||| | ||||||||| ||||||||||||||    
T  41029340 gtggtcgggattcgaaccccggaccttgcatatattatacattgt 41029296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 41250051 - 41250087
Alignment:
Q  58 ttgaacctcagaccttgcaaatattatacattgttct 94  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  41250051 ttgaacctcggaccttgcatatattatacattgttct 41250087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 5604610 - 5604654
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||    
T  5604610 gtggtcgggatttgaacctcagactatgcatatattatacattgt 5604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 14049877 - 14049921
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||| ||| ||||||||||||||||||||| ||||||| ||||||    
T  14049877 gtggccggaatttgaacctcagaccttgcatatattatgcattgt 14049921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 20744206 - 20744162
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcatatattatgcattgt 20744162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 34701205 - 34701169
Alignment:
Q  57 tttgaacctcagaccttgcaaatattatacattgttc 93  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  34701205 tttgaacctcagaccttgcatatattatgcattgttc 34701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 19647501 - 19647545
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||| |||||||| || ||||||||||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgt 19647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 12218276 - 12218324
Alignment:
Q  45 tagtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 93  Q
    |||||||||||||||||||  ||||||||||| || |||| ||||||||    
T  12218276 tagtggtcgggatttgaactccagaccttgcatattttatgcattgttc 12218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 24408566 - 24408526
Alignment:
Q  44 gtagtggtcgggatttgaacctcagaccttgcaaatattat 84  Q
    |||||||||||| |||||||| ||||||||||| |||||||    
T  24408566 gtagtggtcggggtttgaaccccagaccttgcatatattat 24408526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 40446043 - 40446007
Alignment:
Q  55 gatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  40446043 gatttgaacctcagaccttgcatatattatgcattgt 40446007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 22630353 - 22630397
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  22630353 gtggtcggggtttgaacctcagaccttgcatatattatgcattgt 22630397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 37930840 - 37930884
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  37930840 gtggtcggggtttgaacctcagaccttgcatatattatgcattgt 37930884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 6610331 - 6610289
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacatt 89  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||    
T  6610331 gtggtcggggtttgaaccccagaccttgcatatattatacatt 6610289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 42344621 - 42344657
Alignment:
Q  57 tttgaacctcagaccttgcaaatattatacattgttc 93  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  42344621 tttgaacctcggaccttgcatatattatacattgttc 42344657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 43034335 - 43034379
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||| |||| |||||||||||||||||||| ||||||| ||||||    
T  43034335 gtggccggggtttgaacctcagaccttgcatatattatgcattgt 43034379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 48067197 - 48067157
Alignment:
Q  51 tcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||  ||||||| ||||||||||||||    
T  48067197 tcgggatttgaacctcatgccttgcatatattatacattgt 48067157  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 690846 - 690781
Alignment:
Q  57 tttgaacctcagaccttgcaaatattatacattgt-tctactaacagtgagctaaactcacaaggact 123  Q
    |||||||||||||| ||||| |||||||||||||| ||| | |||  |||||||||||||||||||||    
T  690846 tttgaacctcagacgttgcatatattatacattgtctcttccaac--tgagctaaactcacaaggact 690781  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 12303647 - 12303604
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattg 90  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||    
T  12303647 gtggtcgggatttgaacttcaaaccttgcatatattatacattg 12303604  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 11790327 - 11790373
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 93  Q
    ||||||||||||||||||||| |||||| | ||||||| ||||||||    
T  11790327 gtggtcgggatttgaacctcataccttgtatatattatccattgttc 11790373  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 4138059 - 4138015
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||| |||||| ||| ||||||||| ||||||||||||||    
T  4138059 gtggtcggggtttgaatctcggaccttgcatatattatacattgt 4138015  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 863 - 910
Alignment:
Q  44 gtagtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  863 gtagtggtcgggatttcaacctcagaccttgcatatactatagattgt 910  T

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Target: scaffold0314; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 4372 - 4419
Alignment:
Q  44 gtagtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  4372 gtagtggtcgggatttcaacctcagaccttgcatatactatagattgt 4419  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 1456543 - 1456577
Alignment:
Q  57 tttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  1456543 tttgaacctcagaccttgcatatattatacattgt 1456577  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 38798928 - 38798891
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattat 84  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  38798928 gtggtcgggatttgaacctcggaccttgcatatattat 38798891  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 8075853 - 8075809
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||| |||| |||||||||||||||||||| ||||||| ||||||    
T  8075853 gtggccggggtttgaacctcagaccttgcatatattatgcattgt 8075809  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 25727960 - 25728004
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||| | ||||||||| ||||||| ||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgt 25728004  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 28430568 - 28430604
Alignment:
Q  57 tttgaacctcagaccttgcaaatattatacattgttc 93  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  28430568 tttgaacctcagaccttgcatatattatgcattgttc 28430604  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 5250 - 5176
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc-tactaacagtgagctaaactcacaaggac 122  Q
    ||||| ||| |||||||||||||||||||| ||||||| |||||| | ||| |  | ||||||||||||||||||||    
T  5250 gtggttggggtttgaacctcagaccttgcatatattatgcattgtccatacca--attgagctaaactcacaaggac 5176  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 34461783 - 34461824
Alignment:
Q  50 gtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  34461783 gtcgggatttgaaccgcagaccttacatatattatacattgt 34461824  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 7204935 - 7204862
Alignment:
Q  49 ggtcgggatttgaacctcagaccttgcaaatattatacattgtt-ctactaacagtgagctaaactcacaaggact 123  Q
    ||||| |||||||| || | |||||||| ||||||||||||||| ||||||||  |||| |||||| |||||||||    
T  7204935 ggtcgagatttgaatcttaaaccttgcatatattatacattgttcctactaac--tgagataaacttacaaggact 7204862  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 27571842 - 27571886
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    |||||||||||||||||| || |||||||| ||||||| ||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgt 27571886  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 32944833 - 32944877
Alignment:
Q  47 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 91  Q
    ||||||||| |||||||||||||||||||| || |||| ||||||    
T  32944833 gtggtcggggtttgaacctcagaccttgcatattttatgcattgt 32944877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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