View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_low_1 (Length: 897)
Name: NF14289_low_1
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 820; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 15 - 879
Target Start/End: Complemental strand, 47477372 - 47476508
Alignment:
| Q |
15 |
caaaggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgataca |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477372 |
caaaggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcaatgttgaatacattgatctctattatcagcacagagtcgataca |
47477273 |
T |
|
| Q |
115 |
accgtgcctattgaggatacagttaaggatatttcttcctatgtaaaactagtatttgatttgagcatagtacacggcaacacgttacatatacatgttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47477272 |
accgtgcctattgaggatacagttaaggatatttcttcctatgtaaaactagtatttgatttgagcatagtacacggcaacaagttacatatacatgttg |
47477173 |
T |
|
| Q |
215 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataagctggtcttgtagggttgagttattgacaattcaaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47477172 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataaactggtcttgtagggttgagttattgacaattcaaat |
47477073 |
T |
|
| Q |
315 |
ttgaagattatttggcttatttcactagatgtgttgttaacaagtttgttgtgttataggtaggtgaacttaagaaactggtggaagagggaaaagttaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47477072 |
ttgaagattatttggcttatttcactagatgtgttgttaacaagtttgttgtgctataggtaggtgaacttaagaaactggtggaagagggaaaagttaa |
47476973 |
T |
|
| Q |
415 |
gtatattggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacagctttacaaatagagtggtctctctggactcgc |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476972 |
atatattggactatctgaagccagccccgatacaataaggagagcacatgctgttcatcctatcacagctttacaaatagagtggtctctctggactcgc |
47476873 |
T |
|
| Q |
515 |
gacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttcacatgataagattacaacactcatgattgtttgttcattaaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47476872 |
gacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttcacatgataagattacaacactcatgattgtttgttcattaaa |
47476773 |
T |
|
| Q |
615 |
taataattcgaacaactttcactaattacgagttattcagtggaaccgattgctctttgctgtattgaattgcatgtttgtgttaatgagattttactta |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476772 |
taataattcgaacaactttcactaattacgagttattcagtggaaccgattgctctttgctgtattgaattgcatgtttgtgttaatgagattttactta |
47476673 |
T |
|
| Q |
715 |
tttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggtaaaggnnnnnnngctggcaaaggagttatcgaagatgt |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
47476672 |
tttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggtaaaggtttttttgctggcaaaggagttatcgaagatgt |
47476573 |
T |
|
| Q |
815 |
gccgagcttcatggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgccatag |
879 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47476572 |
gccgagcttcatggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgccatag |
47476508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 215 - 573
Target Start/End: Complemental strand, 47473874 - 47473516
Alignment:
| Q |
215 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataagctggtcttgtagggttgagttattgacaattcaaat |
314 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
47473874 |
atatgcttacattatttgttgagagtcccaaattataaatgggagactcccataccttgataagctggttttctagggttgagttattgacaattcaaat |
47473775 |
T |
|
| Q |
315 |
ttgaagattatttggcttatttcactagatgtgttgttaacaagtttgttgtgttataggtaggtgaacttaagaaactggtggaagagggaaaagttaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47473774 |
ttgaagattatttggcttatttcactagatgtgttgttaacaagtttgttgtgttataggtaggtgaacttaagaaactggtggaagagggaaaagttaa |
47473675 |
T |
|
| Q |
415 |
gtatattggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacagctttacaaatagagtggtctctctggactcgc |
514 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||| ||||||||||||||||||| ||||||||| |
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|
| T |
47473674 |
gtatattggactatctgaagccagccctgatacaataaggagagcgcatgctgttcatcccatcactgctgtacaaatagagtggtctctttggactcgc |
47473575 |
T |
|
| Q |
515 |
gacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttca |
573 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47473574 |
gacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttca |
47473516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 321 - 572
Target Start/End: Complemental strand, 47486483 - 47486232
Alignment:
| Q |
321 |
attatttggcttatttcactagatgtgttgttaacaagtttgttgtgttataggtaggtgaacttaagaaactggtggaagagggaaaagttaagtatat |
420 |
Q |
| |
|
||||| || |||||| ||||||||| |||||||||||||| || | ||| ||||||||||||||| ||| |||||||||| |||||||| |||||||| |
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| T |
47486483 |
attatctgacttattacactagatgcattgttaacaagtttcttctattacaggtaggtgaacttatgaagttggtggaagaaggaaaagtgaagtatat |
47486384 |
T |
|
| Q |
421 |
tggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacagctttacaaatagagtggtctctctggactcgcgacatt |
520 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||||||| || ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||| |
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| T |
47486383 |
agggctatctgaagctagcccagatacaataaggagagcgcacaccattcatcccatcacagctgtacaaatggagtggtctctttggactcgtgacatt |
47486284 |
T |
|
| Q |
521 |
gagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttc |
572 |
Q |
| |
|
||| | ||||||||||| || ||| ||||||||||||||||| ||||||||| |
|
|
| T |
47486283 |
gaggatgagatagttccactatgccggttagtttgagttcctgtccaagttc |
47486232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 47486661 - 47486544
Alignment:
| Q |
17 |
aaggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaac |
116 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | |
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|
| T |
47486661 |
aaggttcaccggattatgtgcgttcatgctgcgaagctagcttgaaacgtctcgatgtcgaatacattgatctgtattatcagcacagagtggatacatc |
47486562 |
T |
|
| Q |
117 |
cgtgcctattgaggatac |
134 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
47486561 |
tgtgcctatagaggatac |
47486544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 47474034 - 47473898
Alignment:
| Q |
19 |
ggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaaccg |
118 |
Q |
| |
|
|||||||| ||||| ||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | | |
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|
| T |
47474034 |
ggttcacctgagtacgtgcgctcgtgttgtgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagaattgatacttctg |
47473935 |
T |
|
| Q |
119 |
tgcctattgaggatacagttaaggatatttcttccta |
155 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47473934 |
tgtctattgaggatacagttaaggatatttcttccta |
47473898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 684 - 776
Target Start/End: Complemental strand, 47473460 - 47473367
Alignment:
| Q |
684 |
ttgcatgtttgtgttaa-tgagattttacttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggt |
776 |
Q |
| |
|
|||| |||||||||||| || || || ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
47473460 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtattggaattgtaccatatagtcctcttggt |
47473367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 710 - 776
Target Start/End: Complemental strand, 47486147 - 47486081
Alignment:
| Q |
710 |
acttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggt |
776 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
47486147 |
acttatttaaagcttttgttgatacagagagcttggtattggaattgtaacatatagtcctcttggt |
47486081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 523
Target Start/End: Complemental strand, 47469374 - 47469234
Alignment:
| Q |
383 |
cttaagaaactggtggaagagggaaaagttaagtatattggactatctgaagccagccccgatacaataaggagagcacatgttgttcatcctatcacag |
482 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||| || ||| ||||||| || || | |||||||| || || ||||||| ||||||||| || || | |
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|
| T |
47469374 |
cttaagaagttggttgaagagggaaagattaagtacataggattatctgaggctagtactgatacaatcagaagggcacatgctgttcatcccattactg |
47469275 |
T |
|
| Q |
483 |
ctttacaaatagagtggtctctctggactcgcgacattgag |
523 |
Q |
| |
|
|| | ||||| || |||||||| |||||||| || |||||| |
|
|
| T |
47469274 |
ctgttcaaatggaatggtctctttggactcgtgaaattgag |
47469234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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