View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_low_11 (Length: 603)

Name: NF14289_low_11
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_low_11
NF14289_low_11
[»] chr7 (19 HSPs)
chr7 (14-588)||(23842642-23843220)
chr7 (176-367)||(23838026-23838217)
chr7 (187-364)||(23852908-23853085)
chr7 (187-299)||(23807958-23808070)
chr7 (187-354)||(23855293-23855460)
chr7 (187-299)||(23791695-23791807)
chr7 (372-550)||(23837783-23837955)
chr7 (187-367)||(23849034-23849214)
chr7 (187-368)||(23802490-23802671)
chr7 (195-304)||(23797918-23798027)
chr7 (187-304)||(23823128-23823245)
chr7 (187-299)||(23828102-23828214)
chr7 (187-367)||(23840586-23840766)
chr7 (187-297)||(23857268-23857378)
chr7 (364-421)||(23855159-23855217)
chr7 (132-161)||(23838219-23838248)
chr7 (187-367)||(23844034-23844214)
chr7 (187-299)||(23817442-23817554)
chr7 (364-404)||(23848931-23848971)
[»] chr4 (1 HSPs)
chr4 (524-555)||(17204609-17204640)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 14 - 588
Target Start/End: Complemental strand, 23843220 - 23842642
Alignment:
Q  14 tcttgcacatagtaatgttaacaag---gataacaaatgattaagcattgttagtttgaatagggagcacattaagcatcgaaaaccagac--gcattca 108  Q
    |||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  23843220 tcttgcacatagtaatgttaacaagaaggataacaaatgattaatcattgttagtttgaatagggagcacattaagcatcgaaaaccagacatgcattca 23843121  T
Q  109 atctgaagcgtcaatgccataattagttcataagcaacataatttcatgaagaatattgatgtataaactagagttacttaccttgtcatcaatgaactt 208  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23843120 atctgaagcgtcaatgccatatatagttcataagcaacataatttcatgaagaatattgatgtataaactagagttacttacattgtcatcaatgaactt 23843021  T
Q  209 ggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgtactcaagaatcacacgagactcc 308  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |    
T  23843020 ggtccagaaacgagccagggctctttgataagaatcattcggcaagataggttttcgtttccaagtctcatcaatgtactcaagaatcacacgagacttc 23842921  T
Q  309 gagacgggctttcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattttagagcaatttgaactctaatgacaaatgggcttccc---- 404  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  23842920 gatacgggctttcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattttagagcaatttgaactctaatgacaaatgggcttcccacag 23842821  T
Q  405 -cagaacctaaaagcttctgcttcactacttcctcagatgcagccatcacttcacagccttgcaatactctcttctttactttaacaactaatatatgaa 503  Q
     |||||| |||||      |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23842820 acagaacgtaaaa------gcttcactacttcctcagatgcagccatcactccacagccttgcaatactctcttcttaactttaacaactaatatatgaa 23842727  T
Q  504 tcatagttctaaattatagcccgcaatataaaagttttagagatctctgcaatcgtatttaaaacataatttagactgcatcaac 588  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23842726 tcatagttctaaattatagcccgcaatataaaagttttagaggtctctgcaatcgtatttaaaacataatttagactgcatcaac 23842642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 23838217 - 23838026
Alignment:
Q  176 actagagttacttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtc 275  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||   ||||||||||  ||| |||||||||||    
T  23838217 actagagttacttaccttgtcatcaatgaacttagaccagaaacgagccaaggctctttgataaggatcagaaggcaagataggattttgtttccaagtc 23838118  T
Q  276 tcgtcaatgtactcaagaatcacacgagactccgagacgggctttcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattt 367  Q
    || || |||||||||||||||||||||||||| |||| ||| ||||  || |||||||||||||||||||||||||||||||||||||||||    
T  23838117 tcatcgatgtactcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtattt 23838026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 364
Target Start/End: Complemental strand, 23853085 - 23852908
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    |||||||||||||||||||||| | ||| |||||  ||| ||||||||||||||||||||| ||||||||||  ||| ||||||||| ||| ||||| ||    
T  23853085 ttaccttgtcatcaatgaacttagaccaaaaacggtccaaggctctttgataaggatcattgggcaagatagggttttgtttccaagcctcatcaatata 23852986  T
Q  287 ctcaagaatcacacgagactccgagacgggctttcacttgtgaacaaaaacaggaaccatcctgtaaactggattgta 364  Q
    ||||||||||||||| || || || |  ||||| |  || ||||||| ||| ||||||||| ||||||||||||||||    
T  23852985 ctcaagaatcacacgtgattctgaaataggcttcccattatgaacaagaactggaaccatcttgtaaactggattgta 23852908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 23807958 - 23808070
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||   ||||||||||  ||| ||||||||||||| ||||| ||    
T  23807958 ttaccttgtcatcaatgaaattggaccagaaacgagccatggctctttgataaggatcagaaggcaagatagggttttgtttccaagtctcatcaatata 23808057  T
Q  287 ctcaagaatcaca 299  Q
    |||||||||||||    
T  23808058 ctcaagaatcaca 23808070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 187 - 354
Target Start/End: Complemental strand, 23855460 - 23855293
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||| ||||| | |||||||| ||| || ||| ||| ||||||||  |||||||||   ||||||||||  ||| ||||||||||||| ||||| ||    
T  23855460 ttaccttctcatctaggaacttggcccaaaagcgatccaaggctcttttgtaaggatcagaaggcaagatagggttttgtttccaagtctcatcaatata 23855361  T
Q  287 ctcaagaatcacacgagactccgagacgggctt-tcacttgtgaacaaaaacaggaaccatcctgtaaa 354  Q
    ||||||||||||||||||||| || |||||||| ||| |||||||||| ||||||||||||| ||||||    
T  23855360 ctcaagaatcacacgagactctgaaacgggcttctca-ttgtgaacaagaacaggaaccatcttgtaaa 23855293  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 23791695 - 23791807
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||  |||||||||   ||||||||||  ||| ||||||||||||| ||||| ||    
T  23791695 ttaccttatcatctatgaacttggtccagaaacgagccaaggctctttcgtaaggatcagaaggcaagataggattttgtttccaagtctcatcaatata 23791794  T
Q  287 ctcaagaatcaca 299  Q
    |||||||||||||    
T  23791795 ctcaagaatcaca 23791807  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 372 - 550
Target Start/End: Complemental strand, 23837955 - 23837783
Alignment:
Q  372 gcaatttgaactctaatgacaaatgggcttccc-cagaacctaaaagcttctgcttcactacttcctcagatgcagccatcacttcacagccttgcaata 470  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||||||||      ||| ||||||||||||||||||||||  || |||||||||| |    
T  23837955 gcaatttgaactcgaataacaaatgggcttcccacagaacctaaaagcttc------acttcttcctcagatgcagccatcacaccatagccttgcaaca 23837862  T
Q  471 ctctcttctttactttaacaactaatatatgaatcatagttctaaatta--tagcccgcaatataaaagttttagagatctc 550  Q
    |||   |||| |||||  |||||||| ||||||||||||||  |||  |   |||||| |||||||||||||||||| ||||    
T  23837861 ctc---tcttgactttcgcaactaatgtatgaatcatagttaaaaaaaaatcagcccgaaatataaaagttttagaggtctc 23837783  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 187 - 367
Target Start/End: Complemental strand, 23849214 - 23849034
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||| |||||||||||||| | ||| || ||| |||  |||||||  |||||||||   ||||||||||  ||  ||||||||| ||||||||| ||    
T  23849214 ttaccttttcatcaatgaactttgaccaaaaccgatccaaagctcttttgtaaggatcagaaggcaagatagggttctgtttccaagcctcgtcaatata 23849115  T
Q  287 ctcaagaatcacacgagactccgagacgggctttcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattt 367  Q
    ||||| |||||||||||| || || | ||| || |  || ||||||| ||||||||||||||| ||||||||||| |||||    
T  23849114 ctcaataatcacacgagattctgatatgggattcccattatgaacaagaacaggaaccatcctataaactggattatattt 23849034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 23802490 - 23802671
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||| ||||||||||| |||| |||||||||||||| ||||||||   ||||||||   ||||| || |  ||| ||||||||||||| ||||| ||    
T  23802490 ttaccttatcatcaatgaaattggaccagaaacgagccaaggctcttttggaaggatcagaaggcaatatgggattttgtttccaagtctcatcaatata 23802589  T
Q  287 ctcaagaatcacacgagactccgagacgggctt-tcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtatttt 368  Q
     |||||||||||| | ||||| || | |||||| ||| || |||| ||||||||||||  || | ||||| || |||||||||    
T  23802590 ttcaagaatcacaagggactctgatatgggcttatca-ttatgaataaaaacaggaactttcttataaacagggttgtatttt 23802671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 23797918 - 23798027
Alignment:
Q  195 tcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgtactcaagaa 294  Q
    ||||| |||||||||| ||||||||| |||| |||||||| | ||||||||   ||||||||||  ||| ||||||||||||| ||||| || |||| ||    
T  23797918 tcatctatgaacttggaccagaaacgtgccaaggctcttttagaaggatcagaaggcaagataggattttgtttccaagtctcatcaatatattcaataa 23798017  T
Q  295 tcacacgaga 304  Q
    ||||| ||||    
T  23798018 tcacaagaga 23798027  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 23823128 - 23823245
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||| ||||| || ||||||| ||||||||| |||| |||||||| ||||||||||   |||||||| |  ||| ||||||||||||| ||||| ||    
T  23823128 ttaccttatcatctataaacttggaccagaaacgtgccaaggctcttttataaggatcagaaggcaagattggattttgtttccaagtctcatcaatata 23823227  T
Q  287 ctcaagaatcacacgaga 304  Q
     |||| ||||||| ||||    
T  23823228 ttcaataatcacaagaga 23823245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 23828102 - 23828214
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||| ||||| |||||||| |||||||||||||||| ||||||||  |||||||||   || |||||||  ||| | |||||||| || ||||  ||    
T  23828102 ttaccttatcatctatgaactttgtccagaaacgagccaaggctcttttgtaaggatcagaaggtaagataggattttgcttccaagtttcatcaacata 23828201  T
Q  287 ctcaagaatcaca 299  Q
    |||||||||||||    
T  23828202 ctcaagaatcaca 23828214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 367
Target Start/End: Original strand, 23840586 - 23840766
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||||||||| ||||| || | ||| || ||||||| ||||||||| |  |||||| | ||||| || |  ||| | ||||||  ||| ||||||||    
T  23840586 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaaggctctttggtgtggatcagttggcaaaatggggttttgcttccaaacctcatcaatgta 23840685  T
Q  287 ctcaagaatcacacgagactccgagacgggctt-tcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattt 367  Q
    ||||||||||||| |||| || || | |||||| ||| |||||||||||||| |||||| || | | ||||||||| |||||    
T  23840686 ctcaagaatcacaagagattctgaaatgggcttatca-ttgtgaacaaaaactggaaccttcttatgaactggattatattt 23840766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 23857268 - 23857378
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    |||||||||| || ||||| || | ||| || ||||||| ||||||||| || ||||||   ||||||||||  ||| ||||||||||||| ||||| ||    
T  23857268 ttaccttgtcgtcgatgaagttagaccaaaatcgagccaaggctctttggtatggatcagaaggcaagataggattttgtttccaagtctcatcaatata 23857367  T
Q  287 ctcaagaatca 297  Q
    ||||| |||||    
T  23857368 ctcaataatca 23857378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 23855217 - 23855159
Alignment:
Q  364 attttagagcaatttgaactctaatgacaaatgggcttccc-cagaacctaaaagcttc 421  Q
    |||| ||||||||||||||||| || |||||||| |||||| ||||||| |||||||||    
T  23855217 atttcagagcaatttgaactcttatcacaaatggacttcccacagaacccaaaagcttc 23855159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 23838248 - 23838219
Alignment:
Q  132 tagttcataagcaacataatttcatgaaga 161  Q
    ||||||||||||||||||||||||||||||    
T  23838248 tagttcataagcaacataatttcatgaaga 23838219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 367
Target Start/End: Original strand, 23844034 - 23844214
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||||||||| ||||| || | ||| || ||||||| ||||||||| |  ||||||   ||||| ||||  ||| | ||||||  ||| ||||||||    
T  23844034 ttaccttgtcatcgatgaattttgaccaaaatcgagccaaggctctttggtgtggatcagaaggcaaaatagggttttgcttccaaacctcatcaatgta 23844133  T
Q  287 ctcaagaatcacacgagactccgagacgggctt-tcacttgtgaacaaaaacaggaaccatcctgtaaactggattgtattt 367  Q
    ||||||||||||| | || || || |  || || ||| |||||||||||||| |||||| || | | |||||||||||||||    
T  23844134 ctcaagaatcacaagggattctgatataggtttctca-ttgtgaacaaaaactggaaccttcttatgaactggattgtattt 23844214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 23817442 - 23817554
Alignment:
Q  187 ttaccttgtcatcaatgaacttggtccagaaacgagccagggctctttgataaggatcattcggcaagatagattttcgtttccaagtctcgtcaatgta 286  Q
    ||||||||||||| ||||  |||| ||| || ||| ||| ||||||||| || ||||||   ||||| || |  ||| ||||||||||||| ||||| ||    
T  23817442 ttaccttgtcatctatgaggttggaccaaaatcgaaccaaggctctttggtatggatcagaaggcaatattggattttgtttccaagtctcatcaatata 23817541  T
Q  287 ctcaagaatcaca 299  Q
     ||||||||||||    
T  23817542 ttcaagaatcaca 23817554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 23848971 - 23848931
Alignment:
Q  364 attttagagcaatttgaactctaatgacaaatgggcttccc 404  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  23848971 attttagagcaatttgaactcttatcacaaatggacttccc 23848931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 555
Target Start/End: Complemental strand, 17204640 - 17204609
Alignment:
Q  524 ccgcaatataaaagttttagagatctctgcaa 555  Q
    ||||||||||||||||||||||||||||||||    
T  17204640 ccgcaatataaaagttttagagatctctgcaa 17204609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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