View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_12 (Length: 566)
Name: NF14289_low_12
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 551
Target Start/End: Complemental strand, 11173303 - 11172763
Alignment:
| Q |
8 |
tggtagggtctgtgctgatgattttttgaactgtatttgcagccgacagaggtttggagatgcagaggcaaggaaatggtgggatgagaacagagataga |
107 |
Q |
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| T |
11173303 |
tggtagggtctgtactgatgattttttgaactgtatttgcagccgacagaggtttggagatgcagaggcaaggaaatggtgggatgagaacagagataga |
11173204 |
T |
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| Q |
108 |
cttcgagaacaataccttcagtgaaagcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaaactttgtttc |
207 |
Q |
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| T |
11173203 |
cttcgagaacaataccttcagtgaa-gcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaaactttgtttc |
11173105 |
T |
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| Q |
208 |
tcatcattggtgaatatggactcataagttaataagttattcggttgagtcggatttttcagttaaatttgtttattggagggtataatgttgttttcca |
307 |
Q |
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| T |
11173104 |
tcatcattggtgaatatggattcatatgctaataagttattcggttgagtcggatttttcagttaaatttgtttattggggggtataa---tgttttcca |
11173008 |
T |
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| Q |
308 |
tattata-----------------tatttcacctgggattattatatattatggtcattgttgctataaatcaatttatcatttgctaattttgtgtgtg |
390 |
Q |
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| T |
11173007 |
tattatatatatatgtacttgaattatttcacctgggattattatatattatggtcattgttgctaaatatcaatttatcatttggtaattttgtgtgtg |
11172908 |
T |
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| Q |
391 |
atattgtttagagttaatcgttctttaaattatgttgctcatagttaagttgggctagctttcaaaaactattaataggttttgagttaagttataggat |
490 |
Q |
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| T |
11172907 |
atattgtttagagttgatcgttctttaaattatgttgctcatagttaagttgggctagctttcaaaaactatt----------------ggttataggat |
11172824 |
T |
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| Q |
491 |
ttgagtgaagagtatattaatggaatgttttgagtggagagtacatttatatgaactatat |
551 |
Q |
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| T |
11172823 |
ttgagtgaagagtatattaatggaatgttttgagtgaagagtacatttatatgaactatat |
11172763 |
T |
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