View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_13 (Length: 556)
Name: NF14289_low_13
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 188 - 542
Target Start/End: Original strand, 1093274 - 1093630
Alignment:
| Q |
188 |
gtccttatagacagctaacggtccattgaaaacataagcttcaattgccagtgtattttgctttgatagtaatcttttttctctcttctactgtccagag |
287 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1093274 |
gtccttatagacagctaacggtccattgaaaacagaagcttcaattgccagtgtattttgctttgatagtaatcttttttctctcttctgctgtccagag |
1093373 |
T |
|
| Q |
288 |
aataaaaaccgagctcatgatggtcccgtagaaggttttcatgatgatgtcgtaggtaggttatagtgtgtatcaaacaaggttcaagagttacttgcac |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
1093374 |
aataaaaaccgagctcatgatggtcccgtagaaggttttcatgatgatgccgtaggtaagttatagtgtgaatcaaacaaggttcaagagttacgtgcac |
1093473 |
T |
|
| Q |
388 |
aactattcatctttacttgcatgtgtttattgagtatgtgattatgaccattttacaaactaacttcaatcaattgt--tatgtttctaaattccatgag |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1093474 |
aactattcatctttacttgcatgtgtttattgagtatgtgattatgaccattttacaaactaacttcaatcaattgttatatgtttctacattccatgag |
1093573 |
T |
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| Q |
486 |
attcttaatttttaatccgacattcgattttattgatatgagaaggtaatgctgata |
542 |
Q |
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| T |
1093574 |
attcttaatttttaatccgacattcgatttaattgaaatgagaaggtaatgctgata |
1093630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 1093075 - 1093244
Alignment:
| Q |
20 |
taagacagatattcttctacttcaattatgaacgaaccacacattaagataggactttgtagagcatatgagaaagagaagaaccatttcttacttcttg |
119 |
Q |
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| T |
1093075 |
taagacagatattcttctacttcaattatgaacgaaccacacattaagataggactttgtagagcatatgagaaagagaagaaccatttcttacttcttg |
1093174 |
T |
|
| Q |
120 |
aagaaaattagatagaagtgagatggttgatgtagatgccgggaatccagttgcatggtatgaccttggt |
189 |
Q |
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| T |
1093175 |
aagaaaattagatagaagtgagacggttgatgtagataccgggaatccagttgcatggtatgaccttggt |
1093244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 1570411 - 1570524
Alignment:
| Q |
232 |
ttgccagtgtattttgctttgatagtaatcttttttctctcttctactgtccagagaataaaaaccgagctcatgatggtcccgtagaaggttttcatga |
331 |
Q |
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| T |
1570411 |
ttgccagtgtattttgctttgatcctaatcttttctctctcttctgctgtccagagaataaaaaccaagctcatgatggtcccgtagaaggttttcatga |
1570510 |
T |
|
| Q |
332 |
tgatgtcgtaggta |
345 |
Q |
| |
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||||||||| |||| |
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| T |
1570511 |
tgatgtcgtgggta |
1570524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 347 - 542
Target Start/End: Original strand, 1570574 - 1570767
Alignment:
| Q |
347 |
gttatagtgtgtatcaaacaaggttcaagagttacttgcacaactattcatctttacttgcatgtgtttattgagtatgtgattatgaccattttacaaa |
446 |
Q |
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|||| |||||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||| ||||||| | |||||| |||| |
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| T |
1570574 |
gttaaagtgtgaatcaaacaaggttcaagagttacatgaa----tattcatctttacttacatgtgtttattgagtatatgattataaacatttttcaaa |
1570669 |
T |
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| Q |
447 |
ctaacttcaatcaattgttat--gtttctaaattccatgagattcttaatttttaatccgacattcgattttattgatatgagaaggtaatgctgata |
542 |
Q |
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|| || ||||||||| ||| ||||||| ||||||||||||||| |||||||||||| | ||| ||| |||||||||||||||||||||||||| |
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| T |
1570670 |
ctggttttaatcaattgctatatgtttctacattccatgagattctaaatttttaatcctatgttctgtttcattgatatgagaaggtaatgctgata |
1570767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 1109565 - 1109671
Alignment:
| Q |
82 |
agcatatgagaaagagaagaaccatttcttacttcttgaagaaaattagatagaagtgagatggttgatgtagatgccgggaatccagttgcatggtatg |
181 |
Q |
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||||||| |||| | ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
1109565 |
agcatataagaatgtgaagaacaatttcttacttcttgaaggcaattagatagaagtgagacggttgatgtagatgccgggaatccagttggatggtacg |
1109664 |
T |
|
| Q |
182 |
accttgg |
188 |
Q |
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||||||| |
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| T |
1109665 |
accttgg |
1109671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 542
Target Start/End: Complemental strand, 1563212 - 1563135
Alignment:
| Q |
465 |
tatgtttctaaattccatgagattcttaatttttaatccgacattcgattttattgatatgagaaggtaatgctgata |
542 |
Q |
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|||| ||||| |||||| |||||||| |||||||||||| || ||| ||| |||||||||| ||||||||||||||| |
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| T |
1563212 |
tatgattctacattccacgagattctaaatttttaatcccacgttctgtttcattgatatgaaaaggtaatgctgata |
1563135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 1109702 - 1109746
Alignment:
| Q |
188 |
gtccttatagacagctaacggtccattgaaaacataagcttcaat |
232 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
1109702 |
gtccttatagacagcaaacggtccattgaaaacagaagcttcaat |
1109746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 232 - 345
Target Start/End: Complemental strand, 18736771 - 18736658
Alignment:
| Q |
232 |
ttgccagtgtattttgctttgatagtaatcttttttctctcttctactgtccagagaataaaaaccgagctcatgatggtcccgtagaaggttttcatga |
331 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
18736771 |
ttgccaatgtattttgctttgatagtaatcttttttttctcttctgctgtccagagagtgaaaaccgagctcatgatggtcccgtagaaggttttcatga |
18736672 |
T |
|
| Q |
332 |
tgatgtcgtaggta |
345 |
Q |
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| T |
18736671 |
tgatgtcgtgggta |
18736658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 24500959 - 24500874
Alignment:
| Q |
239 |
tgtattttgctttgatagtaatctttttt-ctctcttctactgtcc-----agagaataaaaaccgagctcatgatggtcccgtag |
318 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
24500959 |
tgtattttgctttgatagtaatctttttttctctcttctgttgtctggtctagagaataaaaaccgagctcatgatggtcccgtag |
24500874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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