View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_14 (Length: 522)
Name: NF14289_low_14
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 27912989 - 27913397
Alignment:
| Q |
1 |
agtattcttagcttctgttttttcacgttgtagtggctttgaaatgcacgaaattattgttaagaggccaaaccaaatactaggtaactcgaatgcaccg |
100 |
Q |
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| T |
27912989 |
agtattcttagcttctgttttttcacgttggagtggctttgaaatgcacgaaattattgttaagaggccaaaccaaatactaggtaactcgaatgcaccg |
27913088 |
T |
|
| Q |
101 |
atagtctacaatagtcttacacaaatattaaacttattttacgataacaatgcatacatattttttaattatattaaagagaatatggctgtgtgaattt |
200 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27913089 |
atagtctacaatagttttacacaaatgttaaacttattttacgataacaatgcatacatattttttaattatattaaagagaatatggctgtgtgaattt |
27913188 |
T |
|
| Q |
201 |
cacttgggaagctaaaatatttaagctgtagtttttcttatgtattatgttaccactcttgttaatctgtgtcatgacgacacttgttaaggaatccaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27913189 |
cacttgggaagctaaaatatttaagctgtagtttttcttatgtattatgttaccagttttgttaatctgtgtcatgacgacacttgttaaggaatccaag |
27913288 |
T |
|
| Q |
301 |
agtagaaatattatcttgaaaaaataatattgaattttatagaattgaattcataacttttcaaaagaattgtttatatcgagtttcttaacatgtgttt |
400 |
Q |
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| T |
27913289 |
agtagaaatattatcttgaaaaaataatattgaattttatagaattgaattcataacttttcaaaagaattgtttatatcgagtttcttaacatgtgttt |
27913388 |
T |
|
| Q |
401 |
aaaatataa |
409 |
Q |
| |
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| ||||||| |
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| T |
27913389 |
agaatataa |
27913397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 507
Target Start/End: Original strand, 27913461 - 27913495
Alignment:
| Q |
473 |
ccaagaggactttaacatatatctttagagtataa |
507 |
Q |
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| T |
27913461 |
ccaagaggactttaacatatatctttagagtataa |
27913495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 19778036 - 19777990
Alignment:
| Q |
281 |
cacttgttaaggaatccaagagtagaaatattatcttgaaaaaataa |
327 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
19778036 |
cactggttaaggaatccaaaagtagaaaaattatcttgaaaatataa |
19777990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 11102020 - 11101972
Alignment:
| Q |
279 |
gacacttgttaaggaatccaagagtagaaatattatcttgaaaaaataa |
327 |
Q |
| |
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|||||| |||||||||||||| |||||||| |||||||| |||| |||| |
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| T |
11102020 |
gacactggttaaggaatccaaaagtagaaaaattatcttaaaaatataa |
11101972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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