View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_18 (Length: 488)
Name: NF14289_low_18
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 56 - 471
Target Start/End: Complemental strand, 43188280 - 43187875
Alignment:
| Q |
56 |
ggatttcagaagtggtggaatggaagctagatccctatatccatccggattccaaataggaacaaatgatgctaacatgttttattgaacgctaactgat |
155 |
Q |
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| T |
43188280 |
ggatttcagaagtggtggaatggaagctagatccctatatccatccggattccaaataggaacaaatgatgctaacatgttttattgaacgccaactgat |
43188181 |
T |
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| Q |
156 |
gaaagaatcaccaaaaaatacacaaaatccagcagttgagcaccgagatataagacaagtagctcagtaagagtcactaaatgctttctagttgtaacaa |
255 |
Q |
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| T |
43188180 |
gaaagaatcaccaaaaa----------tccagcagttgagcaccgagatataagacaagtagctcaataagagtcactaaatgctttctagttgtaacaa |
43188091 |
T |
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| Q |
256 |
cgatgatgttgagaaaaacagaccttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaattgaaagatatcag |
355 |
Q |
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| T |
43188090 |
cgatgatgttgagaaaaacagaccttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaactgaaagatatcag |
43187991 |
T |
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| Q |
356 |
tggaggtcacaatatgaattcaattaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaaccactc |
455 |
Q |
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| T |
43187990 |
tggaggtcacaatatgaattcaattaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaatcactc |
43187891 |
T |
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| Q |
456 |
aaaccgcaattaaact |
471 |
Q |
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| T |
43187890 |
aaaccgcaattaaact |
43187875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 22710133 - 22710090
Alignment:
| Q |
362 |
tcacaatatgaattcaattaattgcagtgttttaaagactgaac |
405 |
Q |
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| T |
22710133 |
tcacaatatgacttcaattaattgcagtgttttaaagactgaac |
22710090 |
T |
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