View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_20 (Length: 464)
Name: NF14289_low_20
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 20814719 - 20815028
Alignment:
| Q |
1 |
cgcaattgcttaactagacaaggtgatacaactgttgcgattatatttggtgtatacatacattctaactcatcactagtttgggtttttctattatttt |
100 |
Q |
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| T |
20814719 |
cgcaattgcttaactagacaaggtgatacaactgttgcgattatatttggtgtatacatacattctaactcatcactggtttgggtttttctattatttt |
20814818 |
T |
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| Q |
101 |
ttgtatgttaatcattaaattctattactttgtacagacacaacttctctcccatgagttattcattgtagggagttcaataaaaatctcaaaaactttg |
200 |
Q |
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| T |
20814819 |
ttgtatgttaatcattaaattctattactttgtacagacacaacttctctcccatgagttattcattgcagggagtttaataaaaatctcaacaactttg |
20814918 |
T |
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| Q |
201 |
tgcataattgtttttgtgtattgtccatgattcaagccaaaaagaactcttgtgtgatgggggtttgttaaaaatct--nnnnnnngtcttgttttgtca |
298 |
Q |
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| T |
20814919 |
tgcataattgtttttgtgtattgtccatgattcaagccaaaaagaactcttgtgtgatgggggtttgttaaaaatctaaaaaaaaagtcttgttttgtca |
20815018 |
T |
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| Q |
299 |
caacttcaaa |
308 |
Q |
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|||||||||| |
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| T |
20815019 |
caacttcaaa |
20815028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 95 - 331
Target Start/End: Original strand, 20841972 - 20842211
Alignment:
| Q |
95 |
tattttttgtatgttaatcattaaattctattactttgtacagacacaacttctctcccatgagttattcattgtagggagttcaataaaaatctcaaaa |
194 |
Q |
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| T |
20841972 |
tattttttgtgtgttaatcattaaattctattactttgtacagacacaacttctctcccatgagttattcattgtagggagtttaataaaaatctcaaca |
20842071 |
T |
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| Q |
195 |
actttgtgcataattg---tttttgtgtattgtccatgattcaagccaaaaagaactcttgtgtgatgggggtttgttaaaaatct-nnnnnnngtcttg |
290 |
Q |
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| T |
20842072 |
actttgtgcataattgttttttttgtgtattgtccatgattcaagccaaaaagaactgttgtgtgat-ggggtttgttaaaaatctaaaaaaaagtcttg |
20842170 |
T |
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| Q |
291 |
ttttgtcacaacttcaaatgaaaatatatttggtcatacac |
331 |
Q |
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| T |
20842171 |
ttttgtcacaacttcaaatgaaaatatatttggacatacac |
20842211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 20841001 - 20841081
Alignment:
| Q |
1 |
cgcaattgcttaactagacaaggtgatacaactgttgcgattatatttggtgtatacatacattctaactcatcactagtt |
81 |
Q |
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| T |
20841001 |
cgcaattccttaactagacaaggtgatacaactgttgcgattatatttggtgtatacatacattctaactcatcactagtt |
20841081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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