View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_21 (Length: 463)
Name: NF14289_low_21
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 28 - 448
Target Start/End: Complemental strand, 5214581 - 5214166
Alignment:
| Q |
28 |
caaaggacgctaccgaggtcggggaagcaaatatttatcgcctgtgatgctagcaatgaaacatgtccatgtgaataattttttggctaattatcaattt |
127 |
Q |
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| T |
5214581 |
caaaggacgctaccaaggtcggggaagcaaataattatcgcctgtgatgctagtaatgaaacatgtccatgtgaataattttttggctaattatcaattt |
5214482 |
T |
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| Q |
128 |
gaagttagacaaaaatgacattattggttaggtaaaatccaatcatagattttgacacctcattgatgagaaaatgccaatcaacatctagctccaacat |
227 |
Q |
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| T |
5214481 |
gaagctagacaaaaatgacattattggttaggtaaaatccaatcatagattttgacacctcattgataagaaaatgccaatcaacatctagctccaacat |
5214382 |
T |
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| Q |
228 |
gccaagtaccaaaaacaattatagcccgttggaaattatttcaacggattaccatgtttcttcatgataatgaaatgttcaattcaatttagttgaaata |
327 |
Q |
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| T |
5214381 |
gccaagtaccaaaaacaattatagcccgttgaaaattatttcaacggattaccatgtttcttcatgataatgaaatgttcaattcaatttagttgaaata |
5214282 |
T |
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| Q |
328 |
ggatcctacactactatttgatggcactatattatatcatatcatataatattttagcaatgtttttgagtcatttgaataatcatttgaggataaatta |
427 |
Q |
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| T |
5214281 |
ggaccctacactactatttgatgacactatattatatc-----atataatattttagtaatgtttttgagtcatttgaataatcatttgaggataaatta |
5214187 |
T |
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| Q |
428 |
ggggagttgcagatgagttgt |
448 |
Q |
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| T |
5214186 |
ggggagtttcagatgagttgt |
5214166 |
T |
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