View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_25 (Length: 437)
Name: NF14289_low_25
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 54 - 430
Target Start/End: Complemental strand, 44945858 - 44945482
Alignment:
| Q |
54 |
tcatcttccatacttcaaagtaattcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgct |
153 |
Q |
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| T |
44945858 |
tcatcttccatacttcaaagtacttcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgct |
44945759 |
T |
|
| Q |
154 |
attgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttg |
253 |
Q |
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| T |
44945758 |
attgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgcgctagttactcctg |
44945659 |
T |
|
| Q |
254 |
gtcccttggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagt |
353 |
Q |
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| T |
44945658 |
gtcccttggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagt |
44945559 |
T |
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| Q |
354 |
ttgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcatttagaaaggagagtgatgatgt |
430 |
Q |
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| T |
44945558 |
ttgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgatgt |
44945482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 55 - 428
Target Start/End: Complemental strand, 44944203 - 44943830
Alignment:
| Q |
55 |
catcttccatacttcaaagtaattcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgcta |
154 |
Q |
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| T |
44944203 |
catcttccatacttcaaagtacttcttcaatcaaacgtatttcgattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgcta |
44944104 |
T |
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| Q |
155 |
ttgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttgg |
254 |
Q |
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|||||||||||| |||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44944103 |
ttgtcatgtcagttttttaatcaccgcacctacactccgagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttgg |
44944004 |
T |
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| Q |
255 |
tcccttggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtt |
354 |
Q |
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| T |
44944003 |
tcccttggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtt |
44943904 |
T |
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| Q |
355 |
tgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcatttagaaaggagagtgatgat |
428 |
Q |
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| T |
44943903 |
tgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgat |
44943830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 397
Target Start/End: Complemental strand, 44940981 - 44940692
Alignment:
| Q |
108 |
tgcttccttgttgcatttttatgcaatgttcagtctataagatgctattgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcat |
207 |
Q |
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|||||||||||||||||| |||| ||| | || |||||||||| |||| ||||| || || |||||||| | || |||||| | ||||||| | |
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| T |
44940981 |
tgcttccttgttgcatttctatgtaatatgcaatctataagatactatgcacatgtgagtttcttaatcaatacacctgcactcaatggcaaaaaggatt |
44940882 |
T |
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| Q |
208 |
atatggaatatattgctaagacattgaatcgtgctagtcactcttggtcccttggcttgcgagcattttacttatcatttcctctcttcctatggattta |
307 |
Q |
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| T |
44940881 |
ttatcgaatatgttgcaaaaacattgaaccgtggaagttattcttggtctcttggtttgagggctttctacacgtcaattccacttgtcctatggattta |
44940782 |
T |
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| Q |
308 |
tgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatacaacaactagaatcacaagggatcttca |
397 |
Q |
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| T |
44940781 |
tgggcccatacccatgtttatttgttcttgcttcacatcatttattttgtacttcttggatacaaccactcaaatcacaagggatcttca |
44940692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 44944252 - 44944219
Alignment:
| Q |
24 |
agttcacttattggaatttttgctagcagttcat |
57 |
Q |
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| T |
44944252 |
agttcacttattggaatttttgctagcagttcat |
44944219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 44945909 - 44945878
Alignment:
| Q |
24 |
agttcacttattggaatttttgctagcagttc |
55 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44945909 |
agttcacttattggaatttttgctagcagttc |
44945878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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