View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_29 (Length: 405)
Name: NF14289_low_29
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 35032598 - 35032986
Alignment:
| Q |
1 |
gaatctcatttagtcttcagttgatgcaaatcacacttgctacattgttgcatgggtttaacatagtgactcaagatggaggaccagttgatatggttga |
100 |
Q |
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| T |
35032598 |
gaatctcatttagtcttcagttgatgcaaatcacacttgctgcattgttgcatgggtttaacatagtgactcaagatggaggaccagttaatatggttga |
35032697 |
T |
|
| Q |
101 |
acactgtggactgaccaatgtcaaagcctctcctttacaagtcattcttaatccgc-tttgtcagcacatgcttttggtcaaaattaatgcttgatgagt |
199 |
Q |
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| T |
35032698 |
acactgtagactgaccaatgtcaaagcctctcctttacaagtcattcttaatccgcgtttgtcagcacatacttttggtcaaaattaatgcttgatgagt |
35032797 |
T |
|
| Q |
200 |
tgaaattctgatatgggtgagttgtttctactctagaataatagaatgattagtgtgaaatgtatacctttttcgacaataattgatttcaaatcctatt |
299 |
Q |
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| T |
35032798 |
tgaaattctgatatgggtgagttgtttttactctagaataatagaataattagtgtgaaatgtatacctttttcgacaataattgatttcaaatcttatt |
35032897 |
T |
|
| Q |
300 |
tgaactattgaatattagac-aaattttatataatatacactacgaaaggggttaatttcattaaggtttggctcagaaaatagagttgt |
388 |
Q |
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| T |
35032898 |
tgaactattgaatattagacaaaattttatataatatacactacgaaa-gggttaatttcattaaggtttggctcagaaaatagagttgt |
35032986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 35040615 - 35040806
Alignment:
| Q |
1 |
gaatctcatttagtcttcagttgatgcaaatcacacttgctacattgttgcatgggtttaacatagtgactcaagatggaggaccagttgatatggttga |
100 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
35040615 |
gaatctcatttagtcttcagctgatgcaaataacacttgctactttattgcatgggtttgacattgtgactaaagatggaggaccagttgatatggttga |
35040714 |
T |
|
| Q |
101 |
acactgtggactgaccaatgtcaaagcctctcctttacaagtcattcttaatccgc-tttgtcagcacatgcttttggtcaaaattaatgct |
191 |
Q |
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||| | ||||| |||| ||||||||||||| | |||||||||||| ||| | |||||| | | |||||| ||||||||||||||| |
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| T |
35040715 |
acaaagcggactcaccacaatcaaagcctctccacttgaagtcattcttactccacgtttgtctaccgaagcttttagtcaaaattaatgct |
35040806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 35026652 - 35026841
Alignment:
| Q |
1 |
gaatctcatttagtcttcagttgatgcaaatcacacttgctacattgttgcatgggtttaacatagtgactcaagatggaggaccagttgatatggttga |
100 |
Q |
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||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
35026652 |
gaatctcatttggtcttcaacttatgcaaataacacttgctacattgttgcatgggtttgacatagtgacttcagatggaggaccggttgatatggttga |
35026751 |
T |
|
| Q |
101 |
acactgtggactgaccaatgtcaaagcctctcctttacaagtcattcttaatccgc-tttgtcagcacatgcttttggtcaaaattaatg |
189 |
Q |
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| T |
35026752 |
aataagtggaatgaccaacatcaaagcttctcctctacaagtcatccttagtccacgtttgtcagatcaagcttatcgtcaaaattaatg |
35026841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 35048237 - 35048386
Alignment:
| Q |
1 |
gaatctcatttagtcttcagttgatgcaaatcacacttgctacattgttgcatgggtttaacatagtgactcaagatggaggaccagttgatatggttga |
100 |
Q |
| |
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|||| |||||| ||||| || | || ||||| |||||||| || ||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||| |
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| T |
35048237 |
gaatatcatttggtcttaagctaattcaaataacacttgcaactttgttgcatggatttgatatagtgactcaagatggaggaccagttggtatggttga |
35048336 |
T |
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| Q |
101 |
acactgtggactgaccaatgtcaaagcctctcctttacaagtcattctta |
150 |
Q |
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| T |
35048337 |
acaaagtggactgaccaacgtcaaagcatctcctctagaagtcattctta |
35048386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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