View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_3 (Length: 712)
Name: NF14289_low_3
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_3 |
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| [»] scaffold0542 (2 HSPs) |
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Alignment Details
Target: scaffold0542 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 329 - 693
Target Start/End: Original strand, 7092 - 7456
Alignment:
| Q |
329 |
tcatcttaagtgatcatattaaagtgctcacaaaaccactagaatatatgataaaggaagcgctctctatactaaatcaaaattttgttgcttacaacaa |
428 |
Q |
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| T |
7092 |
tcatcttaagtgatcatattcaagtgctcacaaaaccactagaatatatgataaaggaagcgctctctatactaaatcaaaattttgttgcttacaacaa |
7191 |
T |
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| Q |
429 |
cttaattagtcaaagt---ttcctcattggttaaggttgatgaagatgttgttgaagttgattcacctccacaagtgcaataaggtaaagaagtagtgat |
525 |
Q |
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| T |
7192 |
cttaattagtcaatgtaatttcctcattggttaaggttgatgaagatgttgttgaagttgattcacctccacaagtgcaataaggtaaagaagtagtgat |
7291 |
T |
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| Q |
526 |
aataattggtttggctatgtaagtaggtttatcttctccagccataatcacaagtacttctgggtcagaattaatcttctctatgttcttggacattacc |
625 |
Q |
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| T |
7292 |
aataattggtttggctatgtaagttggtttatcttctccagccataatcacaagtacttctggctcagaattaatcttctctatgttcttggacattacc |
7391 |
T |
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| Q |
626 |
tgtttcatttcttcatctgaatttgatgatgattgagaagaagaaccacgttttttgtaggagcatac |
693 |
Q |
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| T |
7392 |
tgtttcatttcttcatctgaatt---tgatgattgagaagaagaaccacgttttttgtaggagcatac |
7456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 6769 - 7020
Alignment:
| Q |
9 |
gaagaatatgaccttcataatactagttcaaccaatataggtaagtaaagtcacaaccacaatttgaactcgagctttctcgaataatatatctttagct |
108 |
Q |
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| T |
6769 |
gaagaatgtgaccttcataatactagttcaaccaatataggtaagtaaagtcacaaccacgattcgaactcgagctctttcggataatatttctttagct |
6868 |
T |
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| Q |
109 |
atatttgattaaccacttaagtcaaatcacttagaaattaattactatagtgattaatttgcataactaaatatattaacatcctcaaacttcattaaac |
208 |
Q |
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| T |
6869 |
atatttcattaatcacctaagtcaaatcacttaaaaattaattactatagtgattaatttgcataactaaatatattaacatcctcaaacttcattaaac |
6968 |
T |
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| Q |
209 |
aggaaccaacaaacatggttagtagcaaagtaagtcgccatcccttcattat |
260 |
Q |
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| T |
6969 |
aagaaccaacaaacatggttagtagcaaagtaagtcgccatcccttcattat |
7020 |
T |
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