View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_low_30 (Length: 388)
Name: NF14289_low_30
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 63 - 361
Target Start/End: Original strand, 4841809 - 4842107
Alignment:
| Q |
63 |
tgcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattattgtg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
4841809 |
tgcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattattattgtg |
4841908 |
T |
|
| Q |
163 |
ttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtcgtttactaaatgtcaaaattat |
262 |
Q |
| |
|
||||||||||| ||||| | | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4841909 |
ttggtgcataatacatatggaattaactggttttatactaattagagactcaatgtgagtttatggtcaatctaagttatttactaaatgtcaaaattat |
4842008 |
T |
|
| Q |
263 |
gtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatcactaactatccttaatttcattttccatacatcaagac |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4842009 |
gtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatcattaactatccttaatttcattttccatacagcaagac |
4842107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 64 - 323
Target Start/End: Original strand, 4835124 - 4835384
Alignment:
| Q |
64 |
gcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattatt-gtg |
162 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| ||| |
|
|
| T |
4835124 |
gcaaaatgttgaggaccaaacataagagcagcaaggaataccactagcaaggataagaaaaaggatttagccattttaagaagtgatattattattagtg |
4835223 |
T |
|
| Q |
163 |
ttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtcgtttactaaatgtcaaaattat |
262 |
Q |
| |
|
||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |
|
|
| T |
4835224 |
ttggtgcataatacatatggagttaactggttttatactaattagagactcaaagtgagtttatggtcaatcaaagtcatttactaaatgtcaaaattgt |
4835323 |
T |
|
| Q |
263 |
gtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
4835324 |
gtatgaattgaattattcaacaatgttacaaggtccatgtatttgctactacttgatgatc |
4835384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 321
Target Start/End: Original strand, 4852464 - 4852716
Alignment:
| Q |
70 |
tgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattatt-gtgttggtg |
168 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
4852464 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
4852563 |
T |
|
| Q |
169 |
cataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatga |
268 |
Q |
| |
|
||||| ||||| | ||| ||||| ||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
4852564 |
cataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcgatctaagtcatttactaaatgtcaaaattgtgtatga |
4852663 |
T |
|
| Q |
269 |
attgaattattcaacaatgttacaacttccatgtatttgctactagttgatga |
321 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
4852664 |
attgaattattcaacaatgttacaagttccatgtagttgctactagtttatga |
4852716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 70 - 324
Target Start/End: Original strand, 4856435 - 4856694
Alignment:
| Q |
70 |
tgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattatt-gtgttggtg |
168 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
4856435 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
4856534 |
T |
|
| Q |
169 |
cataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatga |
268 |
Q |
| |
|
||||| ||||| | ||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
4856535 |
cataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaatgtcaaaattgtgtatga |
4856634 |
T |
|
| Q |
269 |
attgaattattcaacaatgttaca----acttccatgtatttgctactagttgatgatca |
324 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4856635 |
attgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgatca |
4856694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 70 - 324
Target Start/End: Original strand, 4878170 - 4878429
Alignment:
| Q |
70 |
tgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattatt-gtgttggtg |
168 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
4878170 |
tgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtg |
4878269 |
T |
|
| Q |
169 |
cataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatga |
268 |
Q |
| |
|
||||| ||||| | ||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
4878270 |
cataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaatgtcaaaattgtgtatga |
4878369 |
T |
|
| Q |
269 |
attgaattattcaacaatgttaca----acttccatgtatttgctactagttgatgatca |
324 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4878370 |
attgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgatca |
4878429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 4871505 - 4871686
Alignment:
| Q |
59 |
caactgcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattat |
158 |
Q |
| |
|
|||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4871505 |
caacagcaaaatgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattattat |
4871604 |
T |
|
| Q |
159 |
tgtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtc |
240 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4871605 |
tgtgttggtgcataatacatatggagttaactggctttatactagttagagactcaatgtgagtttatggtcaatctaagtc |
4871686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 4845746 - 4845927
Alignment:
| Q |
59 |
caactgcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattat |
158 |
Q |
| |
|
|||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4845746 |
caacagcaaaatgttgaggagcaagcataaaagcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattattat |
4845845 |
T |
|
| Q |
159 |
tgtgttggtgcataagacataggaagttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtc |
240 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
4845846 |
tgtgttggtgcataatacataggtagttaactggctttatactagttagagactcaatgtgattttttggtcaatctaagtc |
4845927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 4880708 - 4880982
Alignment:
| Q |
38 |
ttggagggagacgtatggcaccaactgcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccat |
137 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
4880708 |
ttggagggagatgtatggcatcaacagcaaaatgttgaggaacaaacataagagcagcaaggaataacactaataaggataagaaaaaggatttagccat |
4880807 |
T |
|
| Q |
138 |
tttaagaagtgatattattatt-gtgttggtgcataagacataggaagtt-aactggctttatactaattagagactcaaagtgagtttatggtcaatct |
235 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||||||| |||| |||||| ||||||||| |||||||||||| |||||| ||| ||||||| |
|
|
| T |
4880808 |
tttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatc- |
4880906 |
T |
|
| Q |
236 |
aagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatca |
324 |
Q |
| |
|
|| || |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
4880907 |
-------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaagttccatgtatttgatactagctgatgatca |
4880982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 39 - 324
Target Start/End: Original strand, 4860702 - 4860975
Alignment:
| Q |
39 |
tggagggagacgtatggcaccaactgcaaaatgttgaggagaaaacataagagcagcaaggaataacactaataaggataagaaaaaggaataagccatt |
138 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4860702 |
tggagggagatgtatggcatcaacagcaaaatgttgaggaacaaacataagagcagcaaggaataacactaataaggataagaaaaaggatttagccatt |
4860801 |
T |
|
| Q |
139 |
ttaagaagtgatattattatt-gtgttggtgcataagacataggaagtt-aactggctttatactaattagagactcaaagtgagtttatggtcaatcta |
236 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| ||||||| |||| |||||| ||||||||| |||||||||||| |||||| ||| ||||||| |
|
|
| T |
4860802 |
ttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatc-- |
4860899 |
T |
|
| Q |
237 |
agtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgatca |
324 |
Q |
| |
|
|| || |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
4860900 |
------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaagttccatgtatttgatactagctgatgatca |
4860975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 4826402 - 4826570
Alignment:
| Q |
84 |
cataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattatt-gtgttggtgcataagacatagga |
182 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
4826402 |
cataagagcagcaaggaataccactagcaaggataagaaaaaggaattagccactttaagaagtgatattattattagtgttggtgcataatacatagag |
4826501 |
T |
|
| Q |
183 |
agttaactggctttatactaattagagactcaaagtgagtttatggtcaatctaagtcgtttactaaat |
251 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
4826502 |
agttaactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat |
4826570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 4868569 - 4868700
Alignment:
| Q |
219 |
gagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttga |
318 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4868569 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaagctccatgtatttgctactagttga |
4868668 |
T |
|
| Q |
319 |
tgatcactaactatccttaatttcattttccataca |
354 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
4868669 |
tgatcactaactatcc----tttcattttccataca |
4868700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 4842873 - 4843004
Alignment:
| Q |
219 |
gagtttatggtcaatctaagtcgtttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttga |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4842873 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaagctccatgtatttgctactagttga |
4842972 |
T |
|
| Q |
319 |
tgatcactaactatccttaatttcattttccataca |
354 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
4842973 |
tgatcactaactatcc----tttcattttccataca |
4843004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 4846025 - 4846083
Alignment:
| Q |
264 |
tatgaattgaattattcaacaatgttacaacttccatgtatttgctactagttgatgat |
322 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
4846025 |
tatgaattgaattattgaacaatgttacatgttccatgtatttgcaactagttgatgat |
4846083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 4837426 - 4837466
Alignment:
| Q |
211 |
ctcaaagtgagtttatggtcaatctaagtcgtttactaaat |
251 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
4837426 |
ctcaatgtgagtttatggtcaatataagtcatttactaaat |
4837466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 21703888 - 21703756
Alignment:
| Q |
84 |
cataagagcagcaaggaataacactaataaggataagaaaaaggaataagccattttaagaagtgatattattatt-gtgttggtgcataagacatagga |
182 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
21703888 |
cataagagcagcgtggaataccactagtaaggacaagaaaaaagaattagccattttaagaagtgatattaatattagtgttggtgcataagacatagga |
21703789 |
T |
|
| Q |
183 |
agttaactggctttatactaattagagactcaa |
215 |
Q |
| |
|
||||||| || ||||||||| |||||||||||| |
|
|
| T |
21703788 |
agttaaccggttttatactagttagagactcaa |
21703756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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