View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_31 (Length: 380)
Name: NF14289_low_31
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 31075866 - 31076072
Alignment:
| Q |
13 |
aatatctcatatataattctttttgtttgctttgacagggtagcacaacattggttaaactcgtgaaattttcacatttaatacgttttatatttaattc |
112 |
Q |
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| T |
31075866 |
aatatctcataaataattctttttctttgctttggcagggtagcacaacattggttaaactcgtgaaattttcacatttaatacgttttatatttaattc |
31075965 |
T |
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| Q |
113 |
tatgtttttattcaataaaaacaattatcctatgacactttgaattggtaaataaataagnnnnnnngaaggaggtaaataaataagttgtcacatcttc |
212 |
Q |
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| T |
31075966 |
tatgtttttattcaataaaaacaattatcctatgacactttgaattggtaaataaataagtttttttgaaggaggtaaataaataagttgtcacatcttt |
31076065 |
T |
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| Q |
213 |
aatgcat |
219 |
Q |
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| T |
31076066 |
aatgcat |
31076072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 31076867 - 31076952
Alignment:
| Q |
281 |
gtctatcatgaaaggttaaataagaaataaaatataaatattgaaataccttagagaataatgaatttttatgtgagttaagtgat |
366 |
Q |
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| T |
31076867 |
gtctatcatgaaaggttaaataagaaataaaatataaatattgaaataccttagagaataatgaatttttatgtgagttaagtgat |
31076952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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