View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_32 (Length: 368)
Name: NF14289_low_32
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_32 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 1075497 - 1075864
Alignment:
| Q |
1 |
gcagtcttccccttttggagtttgggctatggggaaatgaaaattaaactttatgcaagtgatgaatgatatggcaatgaaaatcatttcaggaactata |
100 |
Q |
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| T |
1075497 |
gcagtcttccccttttggagtttgggctatggggaaatgaaaattaaactttatacaagtgatgaatgatatggcaatgaaaatcatttcaggaactata |
1075596 |
T |
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| Q |
101 |
ctttattattgttatttcttctgtaaatgttatcatcatcaacattaacattgctattactcgtacctctcccgtagaaggaaggaaccctccttattta |
200 |
Q |
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| T |
1075597 |
ctttattattgttatttcttctgtaaatgttatcatcatcaacattaacattgctattactcgtacctctcccgtaaaaggaaggaaccctccttattta |
1075696 |
T |
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| Q |
201 |
cctgaattgtattcatttcataggtactattgcttcttagtgccattgactctgcctataattgtggttgctgtgtacttccattggctcagcatgaaga |
300 |
Q |
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| T |
1075697 |
cctgaattgtattcatttcataggtactattgcttcttagtgccattgactctgcctataattgtggttgctgtgtacttccattggctcagcatgaaga |
1075796 |
T |
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| Q |
301 |
tgttcaagcatgcttaatgtatcttcaaacacattttgaaagaatctacctatatactgtcagagaaa |
368 |
Q |
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| T |
1075797 |
tgttcaagcatgcttaatgtatcttcaaacacattttgaaagaatctacctatatactgtcagagaaa |
1075864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 5128814 - 5128684
Alignment:
| Q |
238 |
tagtgccattgactctgcctataattgtggttgctgtgtacttccattggctcagcatgaagatgttcaagcatgcttaatgtatcttcaaacacatttt |
337 |
Q |
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| T |
5128814 |
tagtgccattgactctgcctataattgtggttgctgtgtacttccattggctcagcatgaagatgttcaagcatgcttaatgtatcttcaaacacatttt |
5128715 |
T |
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| Q |
338 |
gaaagaatctacctatatactgtcagagaaa |
368 |
Q |
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| T |
5128714 |
gaaagaatctacctatatactgtcagagaaa |
5128684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 41304728 - 41304532
Alignment:
| Q |
151 |
ttgctattactcgt----acctctcccgtagaaggaaggaaccctccttatttacctgaattgtattcatttcataggtactattgcttcttagtgccat |
246 |
Q |
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| T |
41304728 |
ttgctattactcgtacctacctctcccataaaaggagggaaccatccttttcttcctaacttttatttatttcataggtactactgcttcttagtgccat |
41304629 |
T |
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| Q |
247 |
tgactctgcctataattgtggttgctgtgtacttccattggctcagcatgaagatgttcaagcatgcttaatgtatcttcaaacacattttgaaagaa |
344 |
Q |
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| T |
41304628 |
tgactctccctatatttgtagttgttgtgtacttccattggcttagcatgaagacgttcaagcatgcttaacttatcttc-atcacattttgaaagaa |
41304532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 13015915 - 13015870
Alignment:
| Q |
228 |
tattgcttcttagtgccattgactctgcctataattgtggttgctg |
273 |
Q |
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| T |
13015915 |
tattgcttcttagtgccattgactctccctataagtgtggttgctg |
13015870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 13015218 - 13015181
Alignment:
| Q |
276 |
tacttccattggctcagcatgaagatgttcaagcatgc |
313 |
Q |
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| T |
13015218 |
tacttctattggctcatcatgaagatgttcaagcatgc |
13015181 |
T |
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