View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_38 (Length: 342)
Name: NF14289_low_38
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_38 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 37850718 - 37850378
Alignment:
| Q |
8 |
ccaagaatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttccttccttctcctcgtttattagaaatccttt |
107 |
Q |
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| T |
37850718 |
ccaataatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggtcaggcagcttccttcctcctcctcgtttattagaaatccttt |
37850619 |
T |
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| Q |
108 |
tgttaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactat |
207 |
Q |
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| T |
37850618 |
tattaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagtggtacagatatacatatcgaggatccaagtactat |
37850519 |
T |
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| Q |
208 |
cgtcacaattttaagttcact------tatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaacataggaga |
301 |
Q |
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| T |
37850518 |
cgtcacaattttaagttcactgatccctatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaacataggaga |
37850419 |
T |
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| Q |
302 |
ggattacccatgaatggtgatggtgaggaattcaataaatt |
342 |
Q |
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| T |
37850418 |
ggattacccatgaatgatgatggtgaggaattcaataaatt |
37850378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 340
Target Start/End: Complemental strand, 28089731 - 28089490
Alignment:
| Q |
110 |
ttaagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcg |
209 |
Q |
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| T |
28089731 |
ttaagataaaaggcccttttcaattcatttctatggagatacatttgaattattatcaccagcacatcagaaatcaatattgaggatccaagttctatca |
28089632 |
T |
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| Q |
210 |
tcacaattttaa-------gttcacttatgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcga-----acaacatag |
297 |
Q |
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| T |
28089631 |
tcacaatttgaacattaccgataactt-tatgatcggttgatttgtagacacatggatttacataactagttttaatgcaattcaacaactaaaacatat |
28089533 |
T |
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| Q |
298 |
gagaggattacccatgaatggtgatggtgaggaattcaataaa |
340 |
Q |
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| T |
28089532 |
gagaggattgcccatgaatgatgatggtgaggaattcaataaa |
28089490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 339
Target Start/End: Complemental strand, 37837241 - 37837002
Alignment:
| Q |
112 |
aagatcagaggtccttttcaattcatctctattgagatacattcgaattattattagcagcgctacagatatacatatcgaggatccaagtactatcgtc |
211 |
Q |
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| T |
37837241 |
aagataagaggcccctttcaattcatttctatggagatacattcgaaatattatcaccatcacagcagaaatcaatattgaggatccaagtactatcatt |
37837142 |
T |
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| Q |
212 |
acaattttaagttcacttatg------tgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaac------atagga |
299 |
Q |
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| T |
37837141 |
acaatttgaacataactgatacctttatgatcagttgatttgtagacacatggatttacattactagttataatgcaattcaaacaacttacacatagga |
37837042 |
T |
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| Q |
300 |
gaggattacccatgaatggtgatggtgaggaattcaataa |
339 |
Q |
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| T |
37837041 |
aaggattacccatgaatgatgatggtgaggaattcaataa |
37837002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 335
Target Start/End: Complemental strand, 37831412 - 37831302
Alignment:
| Q |
231 |
tgtgaccagttgatttgtcgacacagagatttacataaacagatttaatgcaactcgaacaac------ataggagaggattacccatgaatggtgatgg |
324 |
Q |
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| T |
37831412 |
tgtgatcagttgacttgtagacacatggatttacataactagtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatgg |
37831313 |
T |
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| Q |
325 |
tgaggaattca |
335 |
Q |
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| T |
37831312 |
tgaggaattca |
37831302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 37842668 - 37842621
Alignment:
| Q |
292 |
acataggagaggattacccatgaatggtgatggtgaggaattcaataa |
339 |
Q |
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| T |
37842668 |
acatatgagaggattacccatgaatgatgatggtgaggaattcaataa |
37842621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 37837379 - 37837325
Alignment:
| Q |
7 |
tccaagaatataccgatcatttaggttctcagtagcctccaacacttgcttatga |
61 |
Q |
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| T |
37837379 |
tccaataatatactgatcatttaggttctctgtagcctccaaaactagctcatga |
37837325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 36865796 - 36865749
Alignment:
| Q |
292 |
acataggagaggattacccatgaatggtgatggtgaggaattcaataa |
339 |
Q |
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| T |
36865796 |
acataggagaggattacccatgaacgatgacggtgaggaattcaataa |
36865749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 36866080 - 36866009
Alignment:
| Q |
8 |
ccaagaatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggccagacagcttcctt |
79 |
Q |
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| T |
36866080 |
ccaataatatattgatcatttaggttctctgtagcttccaacacttgatcatgaaggtcaggcagcttcctt |
36866009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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