View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_low_39 (Length: 342)
Name: NF14289_low_39
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 151 - 326
Target Start/End: Complemental strand, 28740228 - 28740059
Alignment:
| Q |
151 |
gtttgaatcgatttttaaaacatgggatgggaatgagtccaaacatttagttttaatttaatgtttcccttttgcagattatgattgttgacttcggatt |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28740228 |
gtttgaatcaatttttaaaacatgggatgggaatgagtccaaa------gttttaatttaatgtttcccttttgcagattatgattgttgacttcggatt |
28740135 |
T |
|
| Q |
251 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaag |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28740134 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaag |
28740059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 28750151 - 28750001
Alignment:
| Q |
176 |
gatgggaatgagtccaaacatttagttttaatttaatgtttcccttttgcagattatgattgttgacttcggattgacatatccaagtggtaccgcaaca |
275 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28750151 |
gatgagaatgagtccaaacatttagttttaatttaatgtttcccttttgcagattatgattgttgacttcggattgacatatccaagtggtacagcaaca |
28750052 |
T |
|
| Q |
276 |
gctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28750051 |
gctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaag |
28750001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 28754076 - 28754020
Alignment:
| Q |
270 |
gcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28754076 |
gcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaag |
28754020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 28750226 - 28750153
Alignment:
| Q |
51 |
ttaattatttga-ttttgaattgaaatatttgcttgcat-----gacatatatctttgatatgaatgaactata |
118 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
28750226 |
ttaattatttgaattttgcattgaaatatttgtttgcattgcatgacatatatcttttctatgaatgaactata |
28750153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 39942791 - 39942895
Alignment:
| Q |
222 |
ttgcagattatgattgttgacttcggattgacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactag |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39942791 |
ttgcagattatgattgttgacttcaaattgacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactag |
39942890 |
T |
|
| Q |
322 |
caaag |
326 |
Q |
| |
|
||||| |
|
|
| T |
39942891 |
caaag |
39942895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 29247307 - 29247218
Alignment:
| Q |
238 |
ttgacttcggattgacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaagt |
327 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| || || |||| |||||||||||||||| |
|
|
| T |
29247307 |
ttgacttcaaattaacatatccaagtggtactgcaactgctcatctcatcaacagcttccacactcctcaaggagccaaactagcaaagt |
29247218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University