View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_low_42 (Length: 331)
Name: NF14289_low_42
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 5 - 320
Target Start/End: Complemental strand, 48490626 - 48490299
Alignment:
| Q |
5 |
cataacaaacaaacgaacatgttgtaaacattcggtttttaactcaaaatctgcaagaacctggatttgaatctcgttgcctattaggttcaacaaagag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48490626 |
cataacaaacaaacgaacatgttgtaaacattcggtttttaactcaaaatctgcaagaacctggatttgaatctcgttgcctattaggttcaagaaagag |
48490527 |
T |
|
| Q |
105 |
agcaaaggatatattcaaaatacttcatcttctttaatcattgataatgttttacaaaagtctcttctggagaagaagccccaaaagaatcgcactgtac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48490526 |
agcaaaggatatattcaaaatacttcatcttctttaatcattgataatgttttacaaaagtctcttctggagaagaagccccaaaagaatcgcactgtac |
48490427 |
T |
|
| Q |
205 |
atttcaattcaacatacacaagtctt------------gttttagatttttccatgccaactcgtgcctaccaagctaattcaagttaaaaatcaatttg |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48490426 |
atttcaattcaacatacacaagtcttgtattagtcaaagttttagatttttccatgccaactcgtgcctaccaagctaattcaagttaaaaatcaatttg |
48490327 |
T |
|
| Q |
293 |
accnnnnnnnttatatcttctaccctat |
320 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
48490326 |
accaaaaaaattatatcttctaccctat |
48490299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University