View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_43 (Length: 326)
Name: NF14289_low_43
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 31075889 - 31075586
Alignment:
| Q |
1 |
aaaaagaattatatatgagatattgttgtggagacannnnnnnnnnngtgattttacaattgaataaaaataaaaacaataatcaagtgcatgaaaggta |
100 |
Q |
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| T |
31075889 |
aaaaagaattatttatgagatattgttgtggagacaattttttttt-gtgattttacaattgaataaaaataaaaacaataatcaagtgcatgaaaggta |
31075791 |
T |
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| Q |
101 |
caagaaaggtcttgcagagttcctagtattattcttatttatttgattaccaacaccaatcaagggattttgatttggttccttatcatgcccccttaat |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31075790 |
caagaaaggtcttggagagttcctagtattattcttatttatttgattaccaacaccaatcaagggattttgattcggttccttatcatgcccccttaat |
31075691 |
T |
|
| Q |
201 |
ctagtgggcggagttggatacacgcctagcttgctgtgaaatgtgttaagaaagaatctttagcaagtgttttcttgaagacataagcaagtgagcatta |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
31075690 |
ctagtgggtggagttggatacacgcctagcttgctgtgaaatgtgttaagaaagaatccctagctagtgttttcttgaagacataagcaagtgagcatta |
31075591 |
T |
|
| Q |
301 |
ttttt |
305 |
Q |
| |
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||||| |
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| T |
31075590 |
ttttt |
31075586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 11308948 - 11309058
Alignment:
| Q |
135 |
ttatttatttgattaccaacaccaatcaagggattttgatttggttccttatcatgcccccttaatctagtgggcggagttggatacacgcctagcttgc |
234 |
Q |
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| T |
11308948 |
ttatttattttataatcagcacctatcaagggattttgactttgttccttatcatgccccctcaagctagtgggtggacttggatacacgcctagcttgc |
11309047 |
T |
|
| Q |
235 |
tgtgaaatgtg |
245 |
Q |
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|| |||||||| |
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| T |
11309048 |
tgcgaaatgtg |
11309058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 13443422 - 13443369
Alignment:
| Q |
135 |
ttatttatttgattaccaacaccaatcaagggattttgatttggttccttatca |
188 |
Q |
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|||||||||| || | ||||| | |||||||||||||||||| ||||||||||| |
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| T |
13443422 |
ttatttattttataatcaacatctatcaagggattttgattttgttccttatca |
13443369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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