View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_45 (Length: 319)
Name: NF14289_low_45
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 29424325 - 29424037
Alignment:
| Q |
1 |
atcctttaacgagctttgcttgatatgttgagaactttggtaatcgactccctactaaggacctcatggagcttggatagtctccaattgtcaatggatc |
100 |
Q |
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| T |
29424325 |
atcctttaacgagctttgcttgatatgttgagaactttggtaatcgactccctactaaggacctcatggagcttggatagtctccaattgtcaatggatc |
29424226 |
T |
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| Q |
101 |
catatacctgcaatacatacttttaaatagccattttgataagagtaatgatatatttacaacactttcttttttgcacattctcactacaccatcaaac |
200 |
Q |
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| T |
29424225 |
catatacctgcaatatatacttt--------------gataagagtaatgatatattgacaacactttcttttttgcacattctccctacaccatcaaac |
29424140 |
T |
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| Q |
201 |
atgtgttataattcaaatgaatagatgattaatttaattattacatcttgaagatgatagtaaatagattagtgaaaaacagattacttaggcaacaagt |
300 |
Q |
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| T |
29424139 |
atgtgttataattcaattgaatagatgattaatttaattattacatcttgaagatgatagtaaatagattagtgaaaaacagattacttaggcaacaagt |
29424040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 29457577 - 29457684
Alignment:
| Q |
12 |
agctttgcttgatatgttgagaactttggtaatcgactccctactaaggacctcatggagcttggatagtctccaattgtcaatggatccatatacctgc |
111 |
Q |
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|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| | |
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| T |
29457577 |
agctttgcttgatactttgagaattttggtaatcgacttcctactaaggacctcatggagcttggataatctcctattgtcaatggatccataaacctac |
29457676 |
T |
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| Q |
112 |
aatacata |
119 |
Q |
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|||||||| |
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| T |
29457677 |
aatacata |
29457684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 38638525 - 38638460
Alignment:
| Q |
238 |
ttattacatcttgaagatgatagtaaatagattagtgaaaaacagattacttaggcaacaagttat |
303 |
Q |
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||||| |||| ||||||||||||| || |||| |||||||| ||||||||||||| ||||||||| |
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| T |
38638525 |
ttattgcatcatgaagatgatagtgaacagataagtgaaaactagattacttaggccacaagttat |
38638460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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