View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_low_50 (Length: 295)

Name: NF14289_low_50
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_low_50
NF14289_low_50
[»] chr5 (20 HSPs)
chr5 (1-284)||(39558724-39559009)
chr5 (107-279)||(18229564-18229736)
chr5 (107-276)||(16667257-16667427)
chr5 (107-253)||(7719175-7719322)
chr5 (107-255)||(30501126-30501275)
chr5 (107-255)||(30541469-30541618)
chr5 (107-244)||(9276577-9276714)
chr5 (127-274)||(2918563-2918711)
chr5 (109-244)||(30104777-30104913)
chr5 (131-231)||(40530445-40530545)
chr5 (131-274)||(5815038-5815181)
chr5 (109-277)||(13479992-13480162)
chr5 (102-244)||(17692230-17692371)
chr5 (131-244)||(34899133-34899246)
chr5 (107-254)||(112473-112621)
chr5 (97-232)||(41583504-41583639)
chr5 (217-276)||(31557992-31558051)
chr5 (192-244)||(7968447-7968499)
chr5 (149-274)||(3140828-3140953)
chr5 (156-244)||(8221143-8221231)
[»] chr4 (29 HSPs)
chr4 (100-244)||(8297835-8297980)
chr4 (102-244)||(35777696-35777839)
chr4 (131-244)||(7852541-7852654)
chr4 (149-277)||(50341831-50341959)
chr4 (131-275)||(51834910-51835054)
chr4 (146-244)||(31429288-31429386)
chr4 (135-244)||(50426989-50427098)
chr4 (107-244)||(41462020-41462158)
chr4 (135-278)||(7444348-7444492)
chr4 (131-281)||(31174611-31174761)
chr4 (102-244)||(49400579-49400721)
chr4 (166-278)||(8261139-8261251)
chr4 (166-278)||(8274556-8274668)
chr4 (149-253)||(31690397-31690500)
chr4 (100-276)||(37138127-37138303)
chr4 (131-206)||(20394634-20394709)
chr4 (203-278)||(23605630-23605705)
chr4 (107-244)||(45900146-45900284)
chr4 (130-244)||(47995734-47995848)
chr4 (131-236)||(27953046-27953150)
chr4 (107-244)||(53014203-53014340)
chr4 (203-281)||(24395157-24395234)
chr4 (131-244)||(25115261-25115373)
chr4 (181-274)||(34391674-34391767)
chr4 (131-228)||(37383768-37383864)
chr4 (217-281)||(40252736-40252800)
chr4 (212-256)||(7388851-7388895)
chr4 (164-281)||(36702813-36702926)
chr4 (217-277)||(38949024-38949084)
[»] chr7 (17 HSPs)
chr7 (107-278)||(43234761-43234932)
chr7 (107-279)||(28770448-28770621)
chr7 (107-244)||(27123245-27123383)
chr7 (131-280)||(44537337-44537486)
chr7 (131-275)||(39320948-39321092)
chr7 (101-244)||(28663136-28663278)
chr7 (107-244)||(43224084-43224221)
chr7 (133-281)||(21727366-21727514)
chr7 (159-280)||(7653600-7653721)
chr7 (156-275)||(3692898-3693018)
chr7 (176-278)||(14651353-14651455)
chr7 (157-274)||(35923474-35923587)
chr7 (131-244)||(35731283-35731396)
chr7 (159-278)||(10200593-10200711)
chr7 (127-277)||(25886162-25886312)
chr7 (131-192)||(26197534-26197595)
chr7 (149-214)||(44592880-44592945)
[»] chr8 (19 HSPs)
chr8 (131-278)||(4384099-4384245)
chr8 (131-244)||(12684491-12684604)
chr8 (93-253)||(3145994-3146158)
chr8 (149-281)||(27801186-27801318)
chr8 (102-237)||(28207590-28207726)
chr8 (131-244)||(2258088-2258201)
chr8 (107-277)||(42636330-42636501)
chr8 (147-253)||(3520792-3520902)
chr8 (131-244)||(33013041-33013154)
chr8 (147-244)||(35901943-35902040)
chr8 (136-244)||(1135162-1135270)
chr8 (130-254)||(36355944-36356063)
chr8 (131-244)||(33949547-33949660)
chr8 (131-274)||(12954724-12954867)
chr8 (149-244)||(24695761-24695855)
chr8 (160-199)||(41676541-41676580)
chr8 (135-276)||(1369824-1369965)
chr8 (135-244)||(12829868-12829977)
chr8 (98-189)||(16723247-16723339)
[»] chr1 (20 HSPs)
chr1 (100-244)||(2864107-2864251)
chr1 (107-281)||(48022315-48022488)
chr1 (98-274)||(47187789-47187964)
chr1 (130-239)||(40460725-40460834)
chr1 (141-278)||(44329602-44329739)
chr1 (107-244)||(39150553-39150691)
chr1 (131-235)||(8365499-8365603)
chr1 (131-281)||(43396975-43397127)
chr1 (131-255)||(42791128-42791252)
chr1 (131-250)||(39156257-39156380)
chr1 (131-279)||(3982261-3982408)
chr1 (149-236)||(18432958-18433045)
chr1 (130-276)||(34409729-34409874)
chr1 (130-244)||(38748718-38748832)
chr1 (130-244)||(8794411-8794527)
chr1 (107-244)||(4851242-4851379)
chr1 (217-278)||(14758640-14758701)
chr1 (131-244)||(32562351-32562463)
chr1 (109-193)||(8043854-8043938)
chr1 (131-187)||(8372991-8373047)
[»] scaffold0036 (1 HSPs)
scaffold0036 (127-275)||(62491-62639)
[»] chr2 (12 HSPs)
chr2 (107-244)||(34904785-34904923)
chr2 (131-244)||(1334881-1334994)
chr2 (107-278)||(4762320-4762492)
chr2 (101-244)||(38533343-38533485)
chr2 (101-244)||(38533866-38534008)
chr2 (133-275)||(31452313-31452454)
chr2 (131-244)||(9448951-9449063)
chr2 (131-239)||(15505540-15505648)
chr2 (165-255)||(29239235-29239325)
chr2 (149-236)||(37993092-37993179)
chr2 (107-244)||(20064882-20065019)
chr2 (135-244)||(41933131-41933240)
[»] chr3 (8 HSPs)
chr3 (131-281)||(48180131-48180281)
chr3 (155-244)||(29083896-29083986)
chr3 (149-244)||(40673448-40673543)
chr3 (128-277)||(12086727-12086876)
chr3 (149-254)||(51351291-51351396)
chr3 (156-199)||(45988267-45988310)
chr3 (107-143)||(43803941-43803977)
chr3 (135-195)||(49362400-49362460)
[»] chr6 (12 HSPs)
chr6 (131-236)||(1840979-1841084)
chr6 (149-274)||(7421686-7421811)
chr6 (165-279)||(31855084-31855198)
chr6 (151-279)||(32823693-32823821)
chr6 (131-229)||(26669291-26669389)
chr6 (135-274)||(17215650-17215789)
chr6 (192-281)||(30801798-30801887)
chr6 (106-216)||(34231980-34232091)
chr6 (131-244)||(2692428-2692540)
chr6 (131-244)||(19293450-19293563)
chr6 (131-236)||(28874395-28874500)
chr6 (192-244)||(27778812-27778862)
[»] scaffold0119 (1 HSPs)
scaffold0119 (131-229)||(1404-1502)
[»] scaffold0003 (1 HSPs)
scaffold0003 (131-244)||(103646-103759)
[»] scaffold0268 (1 HSPs)
scaffold0268 (159-275)||(20215-20330)
[»] scaffold0004 (1 HSPs)
scaffold0004 (139-226)||(335863-335950)
[»] scaffold0419 (1 HSPs)
scaffold0419 (131-236)||(1061-1166)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39559009 - 39558724
Alignment:
Q  1 ggttgttgtaaacatcctttcctaaaaatacaagtctcaaaacccttcatatttggttaatcatgttataatatgtggttaatgtcaatt--tagtttat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||  ||||||||    
T  39559009 ggttgttgtaaacatcctttcctaaaaatacaagtctcaacacccttcatatttggttaatcacgttataatatgtggttaatgccaattgatagtttat 39558910  T
Q  99 attaaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcat 198  Q
    |||||||  ||||||||||||||||| |||  |||||||||| ||  |||||||| |||||||||||||||||| | ||||||||||||||| |||||||    
T  39558909 attaagggacttgttaaagagtgcccccggacactctttaagtattccatatttagtaattattcatttaaaaattcaactgttacaatttccaatgcat 39558810  T
Q  199 tcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttatatt 284  Q
    | |||||||  |||||||||||||| |||||||||||| |||||||||||||  ||||| | ||||||||||||||||||||||||    
T  39558809 ttgatacacgacttttcaataaaaacttactatttaaaatgcttaagaagtgctccgaagacactcgttaacatttcccttatatt 39558724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 279
Target Start/End: Complemental strand, 18229736 - 18229564
Alignment:
Q  107 tcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgataca 206  Q
    ||||||||| |||||||| |  |||||||||||||||| || ||||| ||||||||| |||||||| | |||| |||||||||| ||| ||||| ||| |    
T  18229736 tcttgttaacgagtgcccccaagtactctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaa 18229637  T
Q  207 catcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccctt 279  Q
    ||  |||||| |||||| |||| |||||||||||||||  ||||||||| ||  |||||||||||||||||||    
T  18229636 caatttttcattaaaaacttaccatttaaagtgcttaaagagtgtcccggaagcactcgttaacatttccctt 18229564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 107 - 276
Target Start/End: Complemental strand, 16667427 - 16667257
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    |||| ||||||||||||  ||||  |||||||||||||| || ||||||||||||||| |||||||| | || | |||||||||| ||| ||||| ||||    
T  16667427 tctttttaaagagtgcctccggggcactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatac 16667328  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcc 276  Q
    |||  |||||| |||||| |||||||||||||||||||| |||||| | | | | ||||||||||||||||    
T  16667327 acaatttttcattaaaaacttactatttaaagtgcttaaaaagtgttctggagacactcgttaacatttcc 16667257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 7719175 - 7719322
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    |||| |||| |||||||| ||||  |||||||||||||  ||||||||| |||||||| |||||||||| |||| |||||||||| |||  |||| ||||    
T  7719175 tctttttaacgagtgcccccgggacactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattcaatac 7719274  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcc 253  Q
    ||| ||||||| |||||| ||| |||||||||||||||| ||||||||    
T  7719275 acaacttttcattaaaaacttattatttaaagtgcttaaaaagtgtcc 7719322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 30501275 - 30501126
Alignment:
Q  107 tcttgttaaagagtgccctc-gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||| | ||| |||||||||||||| || ||||| ||||||||| |||||||| | || | |||||||||| ||| ||||| ||||    
T  30501275 tcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatac 30501176  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccg 255  Q
    ||| ||||||| | |||| |||||||||||||||||||| ||||| ||||    
T  30501175 acaacttttcatttaaaacttactatttaaagtgcttaacaagtgccccg 30501126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 30541618 - 30541469
Alignment:
Q  107 tcttgttaaagagtgccctc-gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||| | ||| |||||||||||||| || ||||| ||||||||| |||||||| | || | |||||||||| ||| ||||| ||||    
T  30541618 tcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatac 30541519  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccg 255  Q
    ||| ||||||| | |||| |||||||||||||||||||| ||||| ||||    
T  30541518 acaacttttcatttaaaacttactatttaaagtgcttaacaagtgccccg 30541469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 9276714 - 9276577
Alignment:
Q  107 tcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgataca 206  Q
    ||||||||| ||||| | ||||||| |||| ||||||| || ||||| ||||||||  |||||||||| |||| ||| |||||  ||||||||| |||||    
T  9276714 tcttgttaacgagtgtcttcgggtattcttcaagcatcccaaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaataca 9276615  T
Q  207 catcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     | ||||||| |||||| ||||||||||||||||||||    
T  9276614 taacttttcattaaaaacttactatttaaagtgcttaa 9276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 274
Target Start/End: Complemental strand, 2918711 - 2918563
Alignment:
Q  127 gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaa-tt 225  Q
    ||||||||||||||||| ||| ||||||||||||||  || ||||  | |||| ||| |||||| ||||||||  ||||||| ||||||| |||||| ||    
T  2918711 gggtactctttaagcatttcaaatttaataattattttttaaaaatgtcaactattataatttccaatgcatttaatacacaacttttcattaaaaattt 2918612  T
Q  226 tactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacattt 274  Q
    ||| ||||||| |||||||  |||| ||  |  ||||||||||||||||    
T  2918611 tacaatttaaaatgcttaaagagtgccctaaggatactcgttaacattt 2918563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 30104777 - 30104913
Alignment:
Q  109 ttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacac 207  Q
    |||||||  ||||||||||||  |||||||||||||| || ||||| ||| ||||  |||||||| | |||  |||||||||| ||||||||| ||||||    
T  30104777 ttgttaacaagtgccctcggggcactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacac 30104876  T
Q  208 atcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    | ||||||| |||||| |||| | |||||||| ||||    
T  30104877 aacttttcattaaaaacttaccacttaaagtgtttaa 30104913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 40530545 - 40530445
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||| ||||||||||||| ||||||||  |||||||| | |||| | |||||||||||| ||||| ||||||| || |||| |||||| ||||||    
T  40530545 actctttaaacatctcatatttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttacta 40530446  T
Q  231 t 231  Q
    |    
T  40530445 t 40530445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 274
Target Start/End: Complemental strand, 5815181 - 5815038
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||| || | ||||| |||||||||||||||||| | ||||   |||||||| ||| ||||| | | ||||||||||| |||||| |||||     
T  5815181 actctttaagcaccttaaatttagtaattattcatttaaaaatttaactaccacaatttccaatacattcaacatacatcttttcattaaaaacttactg 5815082  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacattt 274  Q
     || ||||||||||  |||| ||| |||  ||||||||||||||    
T  5815081 ctttaagtgcttaaagagtgccccaaaagcactcgttaacattt 5815038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 277
Target Start/End: Original strand, 13479992 - 13480162
Alignment:
Q  109 ttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaa-tgaactgttacaatttctaatgcattcgatacac 207  Q
    ||||||| |||||||| |  | ||||||||||||| ||| ||||| ||||||||  || |||||| | |||| ||| |||||  ||||||||| ||||||    
T  13479992 ttgttaacgagtgcccccaagcactctttaagcatttcaaatttagtaattattttttaaaaaaaattaactattataattttcaatgcattcaatacac 13480091  T
Q  208 atcttttcaataaaaatttactatttaaagtgcttaagaagtgtc-ccgaaaatactcgttaacatttccc 277  Q
    |   ||| | |||||||||| ||||||||||| ||||  |||||| ||| ||| ||| |||||||||||||    
T  13480092 aatattttattaaaaatttattatttaaagtggttaaagagtgtcaccggaaaaacttgttaacatttccc 13480162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 17692230 - 17692371
Alignment:
Q  102 aaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcg 201  Q
    |||| ||||||||| | |||||| |||| ||| ||||||||||  | ||||| |||||||||  ||||||| | ||||||||||||||  |||||| |      
T  17692230 aagggtcttgttaacgggtgcccccgggcact-tttaagcatcctaaatttagtaattattctcttaaaaagtcaactgttacaattttcaatgcaatta 17692328  T
Q  202 atacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     |||||| ||||||| ||||||  |||||||| ||||||||||    
T  17692329 ctacacaacttttcattaaaaacctactattttaagtgcttaa 17692371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 34899246 - 34899133
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||| || || || ||||||||| ||||||||   || | |||||||||||||||||||  ||| | | ||||||| | |||| ||||||    
T  34899246 actctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttacta 34899147  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||| ||||    
T  34899146 tttaaagtgtttaa 34899133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 254
Target Start/End: Complemental strand, 112621 - 112473
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| ||||| | |||||  ||||||||||||||  | | ||| ||||||||| ||| |||| | ||||| ||||||||  |||| |||  ||||    
T  112621 tcttgttaacgagtgtcatcggggcactctttaagcatcataaaattagtaattattcttttgaaaagtcaactgatacaattttcaatgtatttaatac 112522  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtccc 254  Q
    |||  |||||| |||||||||  ||||||||||||||||  ||||||||    
T  112521 acaatttttcattaaaaatttgttatttaaagtgcttaaagagtgtccc 112473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 41583504 - 41583639
Alignment:
Q  97 atattaaggttcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatg 195  Q
    |||| |||| ||||||||| |||||||| ||||| |||||||||| ||| || |||||  |||||||| || ||||| | || | |||||| ||| ||||    
T  41583504 atatgaagggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatg 41583603  T
Q  196 cattcgatacacatcttttcaataaaaatttactatt 232  Q
    ||||  |||||||  |||||| |||||||||||||||    
T  41583604 cattgaatacacagattttca-taaaaatttactatt 41583639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 31558051 - 31557992
Alignment:
Q  217 ataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcc 276  Q
    ||||||||||| |||| || |||||||| |||||||||| ||| ||||||||||||||||    
T  31558051 ataaaaatttattattaaaggtgcttaataagtgtcccgtaaacactcgttaacatttcc 31557992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 7968447 - 7968499
Alignment:
Q  192 aatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||||  ||||||| ||||||| |||||| ||||||||||||||||||||    
T  7968447 aatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaa 7968499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 3140828 - 3140953
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaag 248  Q
    ||||||||||||||| |||||||| | |||| |||||||||  ||| ||||  ||| ||| ||||| | | |||| ||| ||||||||||| ||||   |    
T  3140828 atttaataattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaacttattatttaaagtgtttaaagtg 3140927  T
Q  249 tgtcccgaaaatactcgttaacattt 274  Q
    |||||||  || |||| |||||||||    
T  3140928 tgtcccgggaacactcattaacattt 3140953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 8221143 - 8221231
Alignment:
Q  156 aattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||||  ||||||| | |||| |||||| ||  ||||||||| |||||||  |||| | |||||| |||||||||||| |||||||    
T  8221143 aattattctcttaaaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaa 8221231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 8297835 - 8297980
Alignment:
Q  100 ttaaggttcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcat 198  Q
    |||||| ||||||||| |||||||| ||||  |||||||||||||| || ||||| ||||||||| |||||||  | ||||||||||||||| |||||||    
T  8297835 ttaagggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcat 8297934  T
Q  199 tcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    || |||||||  |||||| |||||| ||||||||||||||||||||    
T  8297935 tcaatacacaatttttcattaaaaacttactatttaaagtgcttaa 8297980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 35777839 - 35777696
Alignment:
Q  102 aaggttcttgttaaagagtgccctcggg-tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattc 200  Q
    |||| |||||||||  |||||| || || |||||||||| |||| || ||||| ||||||||| |||||||| | |||| ||||||||||||||||||||    
T  35777839 aagggtcttgttaactagtgccttcaggatactctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattc 35777740  T
Q  201 gatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     ||||||| ||||||| |||||| |||| |||||||||||||||    
T  35777739 aatacacaacttttcattaaaaacttaccatttaaagtgcttaa 35777696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 7852654 - 7852541
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||  | ||||| ||||||||| |||||||||| |||| |||||||||  ||||||||  ||||||| ||||||| |||||| ||||||    
T  7852654 actctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttacta 7852555  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||||||||    
T  7852554 tttaaagtgcttaa 7852541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 50341959 - 50341831
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaag 248  Q
    ||||| ||||||||| |||||||| | |||| |||||||||| || |||||| ||||||| ||||||| | |||||||||||| ||||||||||||  ||    
T  50341959 atttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaagag 50341860  T
Q  249 tgtcccgaaaatactcgttaacatttccc 277  Q
    |  |||||||| ||| |||||||||||||    
T  50341859 taccccgaaaacacttgttaacatttccc 50341831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 131 - 275
Target Start/End: Original strand, 51834910 - 51835054
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||  | |||||  |||||||| |||||||| | |||| ||| |||||| ||||||||  ||||||| ||||||| |||||||||||||    
T  51834910 actctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttacta 51835009  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttc 275  Q
    ||||||||| ||||  |||||| ||  || |||||||||||||||    
T  51835010 tttaaagtgtttaaagagtgtctcgggaacactcgttaacatttc 51835054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 31429288 - 31429386
Alignment:
Q  146 catatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||| ||||||| ||||||| | |||| |||||| |||||||||||||    
T  31429288 catatttaaaaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaa 31429386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 50426989 - 50427098
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactattta 234  Q
    ||||||||||||| ||||| ||||||||| ||| |||| | |||| |||||||||| |||||| || | ||||| ||||||| |||||||||||||||||    
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactattta 50427088  T
Q  235 aagtgcttaa 244  Q
    ||||| ||||    
T  50427089 aagtgtttaa 50427098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 41462020 - 41462158
Alignment:
Q  107 tcttgttaaagagtg-ccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| ||||| |||| | | ||||||||||||| | ||||||| ||||||||| |||||||| | |||| ||||||||||| |||||||  ||||    
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatac 41462119  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    | |  |||||| |||||| |||||||||||| |||||||    
T  41462120 ataatttttcattaaaaacttactatttaaaatgcttaa 41462158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 278
Target Start/End: Complemental strand, 7444492 - 7444348
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaa-tgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactattt 233  Q
    |||||||||| || ||||| ||||||| | ||||||||| | |||| |||||||||  ||||||||| ||||||| ||||||  |||||| ||| |||||    
T  7444492 tttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaacttagtattt 7444393  T
Q  234 aaagtgcttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    |||||| ||||  |||||| ||  |  ||||||||||||||||||    
T  7444392 aaagtgtttaaagagtgtctcgggagcactcgttaacatttccct 7444348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 31174761 - 31174611
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||| | ||||  ||||||||| |||||||| | ||||||||||||||  |||  ||||  |||||| ||||||| ||||||||||  |    
T  31174761 actctttaagcatctaaaattttgtaattattcttttaaaaagttaactgttacaattttcaatatattcattacacaacttttcattaaaaatttatca 31174662  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    ||||||||  ||||  | | ||||  ||  |||||||||||||||||||||    
T  31174661 tttaaagtatttaaagaatatcccagaagcactcgttaacatttcccttat 31174611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 49400579 - 49400721
Alignment:
Q  102 aaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcg 201  Q
    |||| ||||||||| |||||| |  | | ||| ||||||||||  | ||||| ||||||||| |||||||||| |||| |||||||||| |||| |||      
T  49400579 aagggtcttgttaacgagtgctccagagcactatttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtattta 49400678  T
Q  202 atacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||  ||||||| ||||| |||  ||||||||||||||||    
T  49400679 atacacgacttttcattaaaattttgttatttaaagtgcttaa 49400721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 8261139 - 8261251
Alignment:
Q  166 ttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcg 265  Q
    ||||||| | ||||||||||||||  ||||||||  ||||| | ||||||| |||||| |||||||||||||||||| |  |||| |||  | | |||||    
T  8261139 ttaaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcg 8261238  T
Q  266 ttaacatttccct 278  Q
    |||||||||||||    
T  8261239 ttaacatttccct 8261251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 8274556 - 8274668
Alignment:
Q  166 ttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcg 265  Q
    ||||||| | ||||||||||||||  ||||||||  ||||| | ||||||| |||||| |||||||||||||||||| |  |||| |||  | | |||||    
T  8274556 ttaaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcg 8274655  T
Q  266 ttaacatttccct 278  Q
    |||||||||||||    
T  8274656 ttaacatttccct 8274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 31690397 - 31690500
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaag 248  Q
    ||||| |||||||| ||||||||| | ||||||| ||||||  ||||||||  ||||||| |||||||  | ||||||||||||||||||| ||||| ||    
T  31690397 atttattaattatt-atttaaaaagtcaactgttgcaattttcaatgcattgaatacacaacttttcataagaaatttactatttaaagtgtttaaggag 31690495  T
Q  249 tgtcc 253  Q
    |||||    
T  31690496 tgtcc 31690500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 276
Target Start/End: Complemental strand, 37138303 - 37138127
Alignment:
Q  100 ttaaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcatt 199  Q
    |||||| ||||||||| |||||  || ||| |||||||||| |  ||| |||||  || ||||| |||||||| | |||| ||| |||||| |||||| |    
T  37138303 ttaagggtcttgttaacgagtgttctggggcactctttaaggaaatcaaatttagcaactattcttttaaaaagtcaactattataatttccaatgcact 37138204  T
Q  200 cgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcc 276  Q
    | ||||||| |||||||  || || || ||| ||||| |||||||  ||||||||| ||  ||||||||||||||||    
T  37138203 caatacacaacttttcataaagaactttctaattaaattgcttaaagagtgtcccggaagcactcgttaacatttcc 37138127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 20394634 - 20394709
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgataca 206  Q
    |||||||||||||| || ||||| ||||||||| |||||||| |||||| |||||||||| ||| ||||| |||||    
T  20394634 actctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca 20394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 23605705 - 23605630
Alignment:
Q  203 tacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    |||||| ||||||| |||||| |||| ||||||||||||||| |||| ||||| | | ||||||||||||||||||    
T  23605705 tacacaacttttcattaaaaacttaccatttaaagtgcttaaaaagtatcccggagacactcgttaacatttccct 23605630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 45900284 - 45900146
Alignment:
Q  107 tcttgttaaagagtgccctcg-ggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||| || || ||||||||||||||  | |||||  |||||||| |||| ||| | |||| | |||||||| ||||||||| ||||    
T  45900284 tcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaatac 45900185  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||| |||||||    ||| |||||| |||||||||||||    
T  45900184 acaacttttcatatgaaacttactaattaaagtgcttaa 45900146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 47995848 - 47995734
Alignment:
Q  130 tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    ||||||||||||||   | ||||| |||||| || |||||||| | || | |||||||||  ||||||||| ||||| | ||||||| |||||| ||||     
T  47995848 tactctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttaca 47995749  T
Q  230 atttaaagtgcttaa 244  Q
    |||||||||||||||    
T  47995748 atttaaagtgcttaa 47995734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 27953150 - 27953046
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||||| ||||| | ||||||  |||||||| | |||| |||||||||  ||||||||| ||||||| ||||||  |||||| |||| |    
T  27953150 actctttaagcatctcaaatttagt-attattattttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttacca 27953052  T
Q  231 tttaaa 236  Q
    ||||||    
T  27953051 tttaaa 27953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 53014340 - 53014203
Alignment:
Q  107 tcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgataca 206  Q
    ||||||||| | ||| ||| ||| ||| ||||| ||||  | ||||| |||||||   |||||||||| |||| |||||||||| ||| ||||| |||||    
T  53014340 tcttgttaacgggtgtccttgggcactttttaaacatcctaaatttagtaattatctttttaaaaaattaactattacaatttccaatacattcaataca 53014241  T
Q  207 catcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    || ||||| | ||||||  ||| |||||||||||||||    
T  53014240 caactttttattaaaaacataccatttaaagtgcttaa 53014203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 24395234 - 24395157
Alignment:
Q  203 tacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    ||||||| |||||| || ||| ||||||| |||||  |||||  |||| ||||||||||||||||||||||||||||||    
T  24395234 tacacatattttca-tacaaagttactatataaaggtcttaaagagtgccccgaaaatactcgttaacatttcccttat 24395157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 25115373 - 25115261
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||| |||  | ||||| ||||||||  |||||||| | |||| |||||||||| |||||| |  ||||||| ||||| | |||||| ||||||    
T  25115373 actctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaacttttta-taaaaacttacta 25115275  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||| ||||    
T  25115274 tttaaagtgtttaa 25115261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 34391767 - 34391674
Alignment:
Q  181 ttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacattt 274  Q
    |||||||||| |||||| || ||||||| ||||| | |||||| ||||||||| ||||| ||||  |||  | ||||| |||||||||||||||    
T  34391767 ttacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaagagtacctcgaaagtactcgttaacattt 34391674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 37383864 - 37383768
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttac 228  Q
    ||||||||||||||  | ||||| ||||||||| |||||||||| ||| |||| || ||| ||||||||| ||| ||| ||||| | |||||||||||    
T  37383864 actctttaagcatccaaaatttagtaattattc-tttaaaaaatcaaccgttataacttccaatgcattcaatatacaactttttattaaaaatttac 37383768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 40252736 - 40252800
Alignment:
Q  217 ataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    |||||||||||||||||||||| |||||  |||| |||| | | |||||||||||||| ||||||    
T  40252736 ataaaaatttactatttaaagtccttaaccagtgccccggagacactcgttaacattttccttat 40252800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 7388851 - 7388895
Alignment:
Q  212 tttcaataaaaatttactatttaaagtgcttaagaagtgtcccga 256  Q
    |||| ||||||||||||||| |||||| ||||| |||||||||||    
T  7388851 tttccataaaaatttactatctaaagttcttaaaaagtgtcccga 7388895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 36702813 - 36702926
Alignment:
Q  164 atttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatact 263  Q
    ||||||||| | || | |||||||||  ||||||||| |||||||  |||||| |||||| |||    |||||||||||||  ||||||||| |   |||    
T  36702813 atttaaaaagtcaattattacaattttcaatgcattcaatacacaatttttcattaaaaactta----ttaaagtgcttaaagagtgtcccggaggaact 36702908  T
Q  264 cgttaacatttcccttat 281  Q
    ||||||||||||| ||||    
T  36702909 cgttaacatttcctttat 36702926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 38949084 - 38949024
Alignment:
Q  217 ataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccc 277  Q
    ||||||||||||||||| |||| |||||  |||| ||  |||| |||||||||||||||||    
T  38949084 ataaaaatttactatttcaagtccttaaagagtgcccttaaaacactcgttaacatttccc 38949024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 43234761 - 43234932
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||| ||||||  | ||||||||||||  ||||||| ||||||||| |||||||||| |||| |||||||||| | | ||||| ||||    
T  43234761 tcttgttaacgagtgctctcgggacattctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaatac 43234860  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    | | ||||||| |||||||||||||||||||||||||||  |||| |||||    ||||||||||||||||||    
T  43234861 ataacttttcattaaaaatttactatttaaagtgcttaaagagtg-cccgagggcactcgttaacatttccct 43234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 107 - 279
Target Start/End: Original strand, 28770448 - 28770621
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||  ||||  |||||||||||||| || | ||| ||||||||| ||| |||| | |||| |||||||||| ||||||||| ||||    
T  28770448 tcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatac 28770547  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccctt 279  Q
    ||| ||||||| |||||| |||||||||| |||||||||  ||||| ||| |   |||||||||||||||||||    
T  28770548 acaacttttcattaaaaacttactatttagagtgcttaaagagtgttccggaggcactcgttaacatttccctt 28770621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 27123245 - 27123383
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||| ||||  |||||||||||||| || ||||| |||| |||| |||||||| | |||| |||||||||| ||||||||   |||    
T  27123245 tcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtac 27123344  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||| ||||||  |||||| |||| |||||||||||||||    
T  27123345 acaacttttcgttaaaaacttaccatttaaagtgcttaa 27123383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 280
Target Start/End: Original strand, 44537337 - 44537486
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||| |||||||| ||||||||| |||||||| | |||| ||| |||||| | || ||   ||||| | ||||||| |||||| ||||||    
T  44537337 actctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttacta 44537436  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccctta 280  Q
    ||||||||||||||  |||| ||||     ||||||||||||||||||||    
T  44537437 tttaaagtgcttaaagagtgccccgggggcactcgttaacatttccctta 44537486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 275
Target Start/End: Complemental strand, 39321092 - 39320948
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||  || |||||| |||||||| |||||||| | |||| |||||||||  |||| |||| ||||||| ||||| |  ||||| ||||||    
T  39321092 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttacta 39320993  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttc 275  Q
     |||||||||||||  |||||| | || | |||||||||||||||    
T  39320992 attaaagtgcttaaagagtgtctcaaagacactcgttaacatttc 39320948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 28663278 - 28663136
Alignment:
Q  101 taaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattc 200  Q
    ||||| ||||||||| |||||||||  || ||||||||||||||  |  ||||  |||||||| |||||||| | |||| |||||||||  |||||||||    
T  28663278 taagggtcttgttaacgagtgccctgaggcactctttaagcatcataactttag-aattattcttttaaaaagtcaactattacaattttcaatgcattc 28663180  T
Q  201 gatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     |||||||  |||||| |||||  ||||||||||||||||||||    
T  28663179 aatacacaatttttcattaaaaccttactatttaaagtgcttaa 28663136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 43224221 - 43224084
Alignment:
Q  107 tcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgataca 206  Q
    ||||||||| || ||||| |||| ||||||||||||||  | | |||   ||||||| |||||||| | ||||||||||||||| |||| ||   |||||    
T  43224221 tcttgttaacgaatgcccccgggcactctttaagcatcctaaaattagatattattcttttaaaaagtcaactgttacaatttccaatgtatgtaataca 43224122  T
Q  207 catcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    || ||||||| |||||| || |||||||||||||||||    
T  43224121 caacttttcattaaaaacttgctatttaaagtgcttaa 43224084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 21727514 - 21727366
Alignment:
Q  133 tctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatt 232  Q
    ||||||||||||||  ||||| ||||||||| |||||||| | |||| |||||||||| ||| ||||| |||||||  | || | |||||| |||  |||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatt 21727415  T
Q  233 taaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    | ||||||||||  |||| ||| ||   |||||||||||||||||||||    
T  21727414 tgaagtgcttaaagagtgccccaaaggcactcgttaacatttcccttat 21727366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 7653600 - 7653721
Alignment:
Q  159 tattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaa 258  Q
    ||||| |||||||| | |||| ||| |||||| ||| |||||  |||||| ||||||| |||||| ||||| ||||||||||||||  |||||||||  |    
T  7653600 tattcttttaaaaagtcaactattataatttccaattcattcattacacaacttttcattaaaaacttactttttaaagtgcttaaagagtgtcccggga 7653699  T
Q  259 atactcgttaacatttccctta 280  Q
      |||||||||||||| |||||    
T  7653700 gaactcgttaacattttcctta 7653721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 3692898 - 3693018
Alignment:
Q  156 aattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttca-ataaaaatttactatttaaagtgcttaagaagtgtccc 254  Q
    |||||||| |||||||||| |||| |||||||||| |||||| || |||||||  |||||| | ||||| |||||| ||||| | |||||  |||| |||    
T  3692898 aattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaagagtgcccc 3692997  T
Q  255 gaaaatactcgttaacatttc 275  Q
    | ||| |||||||||||||||    
T  3692998 ggaaacactcgttaacatttc 3693018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 14651455 - 14651353
Alignment:
Q  176 aactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttc 275  Q
    ||||||||||||||| |||||| ||  |||||| ||||||| ||||||  |||||||| ||||||||||  |||| |||||    |||||||||||||||    
T  14651455 aactgttacaatttccaatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgccccgagggcactcgttaacatttc 14651356  T
Q  276 cct 278  Q
    |||    
T  14651355 cct 14651353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 35923587 - 35923474
Alignment:
Q  157 attattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccga 256  Q
    ||||||| ||| |||||| |||| |||||||||| ||||||||| |||     |||||||||||||| ||| ||||||||||| ||||  ||||| |||     
T  35923587 attattctttttaaaaataaactattacaatttccaatgcattcaataa----cttttcaataaaaacttattatttaaagtgtttaaagagtgttccgg 35923492  T
Q  257 aaatactcgttaacattt 274  Q
    | | ||||||||||||||    
T  35923491 agacactcgttaacattt 35923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 35731283 - 35731396
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||  || |||||| || ||||| |||||||| | |||| |||||||||| |||||| |  ||||||| ||||| |  || || ||||||    
T  35731283 actctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttacta 35731382  T
Q  231 tttaaagtgcttaa 244  Q
     |||||||||||||    
T  35731383 attaaagtgcttaa 35731396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 10200593 - 10200711
Alignment:
Q  159 tattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaa 258  Q
    ||||| |||||||| | ||| ||||||||||| ||||||||  ||||| | | |||| ||||||| |||  |||||||||||||||  ||||||  |||     
T  10200593 tattcttttaaaaagtcaaccgttacaatttcaaatgcattaaatacataac-tttctataaaaacttatcatttaaagtgcttaaagagtgtcatgaag 10200691  T
Q  259 atactcgttaacatttccct 278  Q
      ||||||||||||||||||    
T  10200692 gcactcgttaacatttccct 10200711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 25886162 - 25886312
Alignment:
Q  127 gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaattt 226  Q
    ||||||||||||| ||| | | |||||  ||||||||  ||| ||| | |||| |||||||||  ||| ||||  ||||||| |||||||   |||| ||    
T  25886162 gggtactctttaaacattttaaatttagaaattattctcttagaaagtcaactattacaattttcaatacatttaatacacaacttttcatataaaactt 25886261  T
Q  227 actatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccc 277  Q
    || |||||||||| ||||  |||||||  |||| |||| ||||||||||||    
T  25886262 accatttaaagtgtttaaagagtgtcctaaaaacactcattaacatttccc 25886312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 26197534 - 26197595
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttcta 192  Q
    ||||||||| ||||||| |||||| || ||||| |||||||| | |||| ||||||||||||    
T  26197534 actctttaaacatctcaaatttaaaaactattcctttaaaaattcaactattacaatttcta 26197595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 44592880 - 44592945
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatctttt 214  Q
    ||||||||||||||| |||||||| | |||| |||||||||  |||| |||| ||||||| |||||    
T  44592880 atttaataattattcttttaaaaagttaactattacaattttcaatgtattcaatacacaactttt 44592945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 4384245 - 4384099
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||| |  | ||||| ||||||||| |||||||||| |||| |||||||||| ||||||||| ||||||| | ||||| ||||||||||  |    
T  4384245 actctttaagcaccctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatca 4384147  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    ||||||||||||||  |||||||||| || |||||||||| |||||||    
T  4384146 tttaaagtgcttaaagagtgtcccgagaacactcgttaacgtttccct 4384099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 12684604 - 12684491
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||  || ||||||||||||||| || ||| ||| |||| ||||||||||||||||||||  |||| | ||||| | |||||||||| ||    
T  12684604 actctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttatta 12684505  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||||||||    
T  12684504 tttaaagtgcttaa 12684491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 253
Target Start/End: Original strand, 3145994 - 3146158
Alignment:
Q  93 gtttatattaaggttcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttct 191  Q
    |||||| | |||| ||| ||||| |||||||||||||| |||||| ||||||| |||||||| ||||||||| |||||||| | |||| ||||||||||     
T  3145994 gtttatttaaagggtctcgttaacgagtgccctcgggtcactctt-aagcatcccatatttagtaattattcttttaaaaagttaactattacaatttcc 3146092  T
Q  192 aatgcattcg----atacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcc 253  Q
    |||||||||     || |||| | ||||| |||||| ||||||||||||||||||||  |||||||    
T  3146093 aatgcattcattcaatgcacaccgtttcattaaaaacttactatttaaagtgcttaaagagtgtcc 3146158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 281
Target Start/End: Complemental strand, 27801318 - 27801186
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaag 248  Q
    ||||| ||||||||| |||||||| | |||| |||||||||  |||||||||  |||||| ||||| | |||||| ||||||||||||||||||||  ||    
T  27801318 atttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaagag 27801219  T
Q  249 tgtcccgaaaatactcgttaacatttcccttat 281  Q
    |  ||| | |  |||||||||||||||||||||    
T  27801218 taccccaagagcactcgttaacatttcccttat 27801186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 28207590 - 28207726
Alignment:
Q  102 aaggttcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattc 200  Q
    |||| ||||||||| |||||||| || |  |||||||||||||| || |||||| ||| |||| |||||||| | |||| |||||||||| |||||||||    
T  28207590 aagggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattc 28207689  T
Q  201 gatacacatcttttcaataaaaatttactatttaaag 237  Q
     ||||||| ||||||| |||||| || | ||||||||    
T  28207690 aatacacaacttttcattaaaaactttccatttaaag 28207726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 2258201 - 2258088
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||| || ||||||||||||||| |||||||| | ||   ||||||||| ||||| |||  ||||||| ||||||| | |||| |||| |    
T  2258201 actctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaacttttcatttaaaacttacca 2258102  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||||||||    
T  2258101 tttaaagtgcttaa 2258088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 277
Target Start/End: Complemental strand, 42636501 - 42636330
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaa-tgaactgttacaatttctaatgcattcgata 204  Q
    ||||||||| |||||| | ||||  |||||||||||||| || ||||| |||||||| ||| |||||| | |||| |||||||||  ||||||||  |||    
T  42636501 tcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattatt-attcaaaaaagtcaactattacaatttacaatgcatttaata 42636403  T
Q  205 cacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccc 277  Q
    |||| ||||||| |||||| |||| |||||||||||||||  ||||  |||  |  |||||||||||||||||    
T  42636402 cacaacttttcattaaaaacttaccatttaaagtgcttaaagagtgctccgggagcactcgttaacatttccc 42636330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 3520902 - 3520792
Alignment:
Q  147 atatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaa----atttactatttaaagtgctt 242  Q
    |||| |||||||||||| |||||||||| |||| ||||| ||| |||||||||| ||||| | ||||||| |||||    ||||| ||||| ||||||||    
T  3520902 atatgtaataattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaacttatttattatttcaagtgctt 3520803  T
Q  243 aagaagtgtcc 253  Q
    || ||||||||    
T  3520802 aaaaagtgtcc 3520792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 33013041 - 33013154
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||  || |||||| |||||||| |||||||| | |||| |||||||||| |||| | || ||||||| |||||||  || || ||||||    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttacta 33013140  T
Q  231 tttaaagtgcttaa 244  Q
     |||||||||||||    
T  33013141 attaaagtgcttaa 33013154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 35901943 - 35902040
Alignment:
Q  147 atatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||||||||||||  |||||||| | || | |||||||||| ||||||||| ||||| | ||||||| |||||| ||| |||||||| |||||||    
T  35901943 atatttaataattatttttttaaaaagtcaattattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaaatgcttaa 35902040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 1135162 - 1135270
Alignment:
Q  136 ttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaa 235  Q
    |||||||||||  ||||| ||||||||| |||||||| | |||| |||||||||  |||| |||| ||| ||| ||||||  |||||| |||| ||||||    
T  1135162 ttaagcatctcgaatttagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaa 1135261  T
Q  236 agtgcttaa 244  Q
    |||| ||||    
T  1135262 agtgtttaa 1135270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 36356063 - 36355944
Alignment:
Q  130 tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    ||||||||||| ||| || ||| | ||||||||| ||||||||     || || ||||||||||||||||  ||||||| ||||||| |||||| ||||     
T  36356063 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 36355969  T
Q  230 atttaaagtgcttaagaagtgtccc 254  Q
    ||||||||| |||||  ||||||||    
T  36355968 atttaaagtacttaaatagtgtccc 36355944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 33949660 - 33949547
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||| | | ||||| ||| ||||  |||||||| | |||| |||||||||| |||||| || ||||||| |||||||  || || ||||||    
T  33949660 actctttaagcatattaaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataaataacttacta 33949561  T
Q  231 tttaaagtgcttaa 244  Q
     |||||||| ||||    
T  33949560 attaaagtgtttaa 33949547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 274
Target Start/End: Original strand, 12954724 - 12954867
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||| ||| ||||||| ||||| ||||||||  ||| |||||| |||| ||| |||||  |||  |||  |||||||  |||||||||||||||||  |    
T  12954724 actctataaacatctcaaatttagtaattattttttttaaaaatcaactattataattttcaatagatttaatacacaatttttcaataaaaatttatca 12954823  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacattt 274  Q
    |||||||| | |||  |||||| || | | ||||||||||||||    
T  12954824 tttaaagtacataaagagtgtctcggagacactcgttaacattt 12954867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 24695761 - 24695855
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||| ||||||||  |||||||| | |||| ||||||||||||||||| |  ||||||| |||||  || |||| ||||||||||||||| ||||    
T  24695761 atttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttt-tattaaaacttactatttaaagtgtttaa 24695855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 41676541 - 41676580
Alignment:
Q  160 attcatttaaaaaatgaactgttacaatttctaatgcatt 199  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  41676541 attcatttaaaaagtcaactgttacaatttctaatgcatt 41676580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 276
Target Start/End: Complemental strand, 1369965 - 1369824
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactattta 234  Q
    ||||||||||  | |||||  |||||||| |||||||| | |||| | |||||||| ||||||||| ||| | | |||||||   |||| ||| || |||    
T  1369965 tttaagcatcctaaatttagcaattattcttttaaaaagtcaactatcacaatttccaatgcattcaatagataacttttcatataaaacttattaatta 1369866  T
Q  235 aagtgcttaagaagtgtcccgaaaatactcgttaacatttcc 276  Q
    ||||||||||  ||||||| | ||  ||| ||||||||||||    
T  1369865 aagtgcttaaagagtgtccaggaagcacttgttaacatttcc 1369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 12829977 - 12829868
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactattta 234  Q
    ||||||||||| | ||||||||||||||  |||||||| |  | | ||||||||   ||||||||| ||| | |  |||||| |||||| |||| |||||    
T  12829977 tttaagcatctaaaatttaataattattattttaaaaagtctattattacaattaacaatgcattcaatatataatttttcattaaaaacttaccattta 12829878  T
Q  235 aagtgcttaa 244  Q
    ||||||||||    
T  12829877 aagtgcttaa 12829868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 16723339 - 16723247
Alignment:
Q  98 tattaaggttcttgttaaagagtgccctc-gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaattt 189  Q
    ||||| || ||||||||| ||||| || | ||| |||||||||||||| || ||||  ||||||||| |||||||||| ||||  ||||||||    
T  16723339 tattatgggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaattattcttttaaaaaatcaactaatacaattt 16723247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 2864107 - 2864251
Alignment:
Q  100 ttaaggttcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcat 198  Q
    |||||| ||||||||| ||||| || ||||  ||||||||| |||| ||||||||  |||||||| |||||||| | |||| |||||||||| |||||||    
T  2864107 ttaagggtcttgttaacgagtgtccccgggacactctttaaacatcccatatttaggaattattc-tttaaaaagtcaactattacaatttccaatgcat 2864205  T
Q  199 tcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    || ||||||| ||||||| |||||| ||||||||||||||||||||    
T  2864206 tcaatacacaacttttcattaaaaacttactatttaaagtgcttaa 2864251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 281
Target Start/End: Complemental strand, 48022488 - 48022315
Alignment:
Q  107 tcttgttaaagagtgccctcg-ggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| ||||||||  | ||||||||||||||||| |||||||| ||||||||  |||||||| | |||| || ||||||  ||||||||| ||||    
T  48022488 tcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaatac 48022389  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    | || |||| | |||||| |||||||||||| ||||| ||||||| |||| ||||||||||| ||||||| |||||    
T  48022388 atatttttttattaaaaacttactatttaaaatgctt-agaagtgccccg-aaatactcgttgacatttctcttat 48022315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 274
Target Start/End: Complemental strand, 47187964 - 47187789
Alignment:
Q  98 tattaaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgca 197  Q
    |||||||| |||||| || ||||| |  |||  |||||||||||||| || ||||| |||||||||||||||||||| |||| ||| |||||| ||||||    
T  47187964 tattaaggatcttgtcaacgagtgtctccggacactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgca 47187865  T
Q  198 ttcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacattt 274  Q
    ||| ||||| |  |||||| |||||| |||| |||| ||||| ||||  |||||| ||   ||||||||||||||||    
T  47187864 ttcaatacataatttttcattaaaaacttaccattttaagtgtttaaagagtgtcacg-ggatactcgttaacattt 47187789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 40460834 - 40460725
Alignment:
Q  130 tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    |||||||||||||||  | |||||||||||||||||||||||||| || | ||||| |||| |||  |||| ||| |||  |||||| |||||| |||||    
T  40460834 tactctttaagcatccaaaatttaataattattcatttaaaaaatcaattattacagtttccaatttattcaatatacaatttttcattaaaaacttact 40460735  T
Q  230 atttaaagtg 239  Q
    ||||||||||    
T  40460734 atttaaagtg 40460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 44329602 - 44329739
Alignment:
Q  141 catctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgc 240  Q
    ||||||||||||||||||||||| |||||||| | |||| ||| |||||  ||||||||| ||||| |  |||| | |||||| || ||||||||||||     
T  44329602 catctcatatttaataattattcttttaaaaagtcaactattataattttcaatgcattcaatacataattttttactaaaaactttctatttaaagtgt 44329701  T
Q  241 ttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    ||||  | ||||  | ||| ||||||||||||||||||    
T  44329702 ttaaagaatgtcgtggaaacactcgttaacatttccct 44329739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 39150553 - 39150691
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||| ||||  ||||||||||||||  | ||||| ||||||||| | |||||| | |||| |||||||||  ||||||||| ||||    
T  39150553 tcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatac 39150652  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    | |  |||||| |||||  |||||| |||||||||||||    
T  39150653 ataaattttcattaaaatcttactagttaaagtgcttaa 39150691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 8365499 - 8365603
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgataca-catcttttcaataaaaatttact 229  Q
    ||||||||| ||||  | ||||||||||||||| |||||||||| |||| ||||||| |  ||||||||| ||||| ||| ||||||||||||| |||||    
T  8365499 actctttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaatacatcat-ttttcaataaaaacttact 8365597  T
Q  230 atttaa 235  Q
    ||||||    
T  8365598 atttaa 8365603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 43397127 - 43396975
Alignment:
Q  131 actctttaagcatctcatatttaataattattcattt--aaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttac 228  Q
    ||||||||||||||  | ||||| |||||||  ||||  ||||| | |||| ||| |||||| ||||||||  ||||||| ||||||| |||||| ||||    
T  43397127 actctttaagcatcctaaatttagtaattatatatttttaaaaagtcaactattataatttccaatgcatttaatacacaacttttcattaaaaacttac 43397028  T
Q  229 tatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    ||||||||||| ||||  ||||  ||||    |||||||||||||||||||||    
T  43397027 tatttaaagtgtttaacgagtgcgccgagggcactcgttaacatttcccttat 43396975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 42791252 - 42791128
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||| | |||||| |||||||  |||||||| | |||| | || ||||  ||||||||| ||||||| ||||| |   |||||||||||    
T  42791252 actctttaagcatcttaaatttaacaattatttttttaaaaagtcaactatcactattttaaatgcattcaatacacagctttttatataaaatttacta 42791153  T
Q  231 tttaaagtgcttaagaagtgtcccg 255  Q
    |||||| | ||||| ||||||||||    
T  42791152 tttaaaatacttaaaaagtgtcccg 42791128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 39156257 - 39156380
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacaca----tcttttcaataaaaattt 226  Q
    ||||||||||||||  | ||||| ||||||||| |||||||| | ||||  ||||||||| ||||||||| |||||||    | |||| | |||||||||    
T  39156257 actctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaatacacaattttttttttattaaaaattt 39156356  T
Q  227 actatttaaagtgcttaagaagtg 250  Q
    || |||||||||| |||| |||||    
T  39156357 accatttaaagtgtttaaaaagtg 39156380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 3982261 - 3982408
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||  || ||| ||||| ||||||||  |  ||||| | |||| ||| ||||| |||||||||  ||| ||| ||||| |||||||||||||||    
T  3982261 actctttaaaaatatcaaatttagtaattatttttagaaaaagtcaactattataatttataatgcattgaatagacaactttt-aataaaaatttacta 3982359  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccctt 279  Q
    ||||||||| ||||  ||||  ||| | | |||||||||||||||||||    
T  3982360 tttaaagtgtttaaagagtgcaccggagacactcgttaacatttccctt 3982408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 18433045 - 18432958
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaa 236  Q
    ||||| ||||||||| |||||||  | |||||||||||||| ||||| |||| ||| ||| ||||||| ||| |||||| ||||||||    
T  18433045 atttagtaattattcttttaaaatgttaactgttacaatttttaatgtattcaatatacaacttttcattaagaatttaatatttaaa 18432958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 276
Target Start/End: Original strand, 34409729 - 34409874
Alignment:
Q  130 tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    |||||||||||||| | | ||||| ||||| ||  |||  ||||| || | ||| |||||| ||||||||| |||||||| |||||| |||||| ||||     
T  34409729 tactctttaagcattttaaatttagtaattttttttttttaaaatcaattattataatttccaatgcattcaatacacat-ttttcattaaaaacttacc 34409827  T
Q  230 atttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcc 276  Q
    ||||||||||| |||  | ||||||  ||  ||||||||||||||||    
T  34409828 atttaaagtgcataaagaatgtcccagaagcactcgttaacatttcc 34409874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 38748832 - 38748718
Alignment:
Q  130 tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    ||||||||||||||  || |||||  |||||||| |||||||| | |||| ||| |||||  |||||| || ||||||| |||||||  || || |||||    
T  38748832 tactctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttact 38748733  T
Q  230 atttaaagtgcttaa 244  Q
    | |||||||||||||    
T  38748732 aattaaagtgcttaa 38748718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 8794411 - 8794527
Alignment:
Q  130 tactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatctttt--caataaaaattta 227  Q
    |||||||||||||||  | ||||| ||||||||| |||||||| | |||| ||| |||||  |||||| || ||||||| |||||   || |||||||||    
T  8794411 tactctttaagcatcctaaatttagtaattattcttttaaaaagtcaactattataattttcaatgcactccatacacaactttttataaaaaaaattta 8794510  T
Q  228 ctatttaaagtgcttaa 244  Q
    ||| ||||||| |||||    
T  8794511 ctaattaaagtacttaa 8794527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 4851379 - 4851242
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||||  ||||  ||||||||||||| |||  ||||| |||||||| |||||||| | |||| |||||||||| |||||| |   |||    
T  4851379 tcttgttaacgagtgcctccgggacactctttaagcatgtcaattttaaaaattattc-tttaaaaagtcaactattacaatttcaaatgcacttactac 4851281  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     || |||||||  || || |||||| |||||||||||||    
T  4851280 ccaacttttcataaagaacttactaattaaagtgcttaa 4851242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 14758640 - 14758701
Alignment:
Q  217 ataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    |||||||||||||||||||||| |||||  |||||||  | |  ||||||||||||||||||    
T  14758640 ataaaaatttactatttaaagtccttaaagagtgtccttagagcactcgttaacatttccct 14758701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 32562463 - 32562351
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||| |||| | ||||| ||||||||  |||||||| | |||| |||||||||  |||||| |  |||||||  |||| | |||||| ||||||    
T  32562463 actctttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgcagtgaatacacaatttttta-taaaaacttacta 32562365  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||| ||||    
T  32562364 tttaaagtgtttaa 32562351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 8043854 - 8043938
Alignment:
Q  109 ttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaa 193  Q
    ||||||| |||||| | |||  ||| ||||||||||  | ||||||||||||||| |||||||| |  ||||||||| |||||||    
T  8043854 ttgttaacgagtgctcccggacactgtttaagcatcctaaatttaataattattcttttaaaaagtcgactgttacagtttctaa 8043938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 8372991 - 8373047
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaat 187  Q
    ||||||||| ||||  | ||||||||||||||| |||||||||| |||| |||||||    
T  8372991 actctttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaat 8373047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 62639 - 62491
Alignment:
Q  127 gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaattt 226  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| | |||| |||| ||||  ||||||||| ||||| |  |||| | |||||| ||    
T  62639 gggtactctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaactt 62540  T
Q  227 actatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttc 275  Q
    ||||||||||||||||||  |||  |||| | | |||||||||||||||    
T  62539 actatttaaagtgcttaaagagtaccccggagacactcgttaacatttc 62491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 34904923 - 34904785
Alignment:
Q  107 tcttgttaaagagtgccctc-gggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||| ||| ||| |||||||||| |||||||||||| ||||||||| |||||||||| |||| ||||||||| ||||| |||  ||||    
T  34904923 tcttgttaacgagtgctctctgggcactctttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaatttttaatgaatttaatac 34904824  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    | |  |||||| ||| || |||| |||||||||||||||    
T  34904823 aaaatttttcattaataacttacaatttaaagtgcttaa 34904785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 1334994 - 1334881
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||| || ||||||||||||||| || ||||||| |||| |||||||||| ||||||||| ||| |||  |||||| |||||| |||  |    
T  1334994 actctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatca 1334895  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||||||||    
T  1334894 tttaaagtgcttaa 1334881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 4762320 - 4762492
Alignment:
Q  107 tcttgttaaagagtgccctcgggt-actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| |||||| | ||| | ||| |||||||||| || ||||| ||||||||  |||| ||| | |||| ||| |||||  ||||||||| ||||    
T  4762320 tcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaattattattttataaagtcaactattataattttcaatgcattcaatac 4762419  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccct 278  Q
    |||  |||| | |||||||||||||||||||||| |||| ||||| | | | || | ||||||||||||||||    
T  4762420 acaattttttattaaaaatttactatttaaagtgattaaaaagtgcctcaagaacattcgttaacatttccct 4762492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 38533485 - 38533343
Alignment:
Q  101 taaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattc 200  Q
    ||||| ||||||||| |||||||||||   ||||||||||||||||| ||||||||||| ||  |||||| | | |||| ||  ||||||||||||||||    
T  38533485 taagggtcttgttaacgagtgccctcgtacactctttaagcatctcaaatttaataatt-ttattttaaatagtcaactattgtaatttctaatgcattc 38533387  T
Q  201 gatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     |||||||  |||||  || ||| ||||||||| || |||||||    
T  38533386 aatacacaatttttctttacaaaattactatttcaaatgcttaa 38533343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 38534008 - 38533866
Alignment:
Q  101 taaggttcttgttaaagagtgccctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattc 200  Q
    ||||| ||||||||| ||||||||||||  || |||||||||||||| ||||| ||||||||  |||||| | | |||| ||  ||||||||||||||||    
T  38534008 taagggtcttgttaacgagtgccctcggacaccctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattc 38533910  T
Q  201 gatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
     |||||||  |||||  || ||| ||||||||| || |||||||    
T  38533909 aatacacaatttttctttacaaacttactatttcaaatgcttaa 38533866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 275
Target Start/End: Complemental strand, 31452454 - 31452313
Alignment:
Q  133 tctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatt 232  Q
    ||||||| |||| ||  |||| ||||||||| |||||||| | |||  |||||||||  ||||||||| ||||||| ||||| | |||||| ||||||||    
T  31452454 tctttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatt 31452356  T
Q  233 taaagtgcttaagaagtgtcccgaaaatactcgttaacatttc 275  Q
    ||||||||||||  | ||| |||  || |||||||||||||||    
T  31452355 taaagtgcttaaataatgttccgggaacactcgttaacatttc 31452313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 9449063 - 9448951
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||| |||| ||||| ||||||||| ||| |||||| |||| ||| |||||  ||| ||||| ||||||| ||||||| |||||| |||| |    
T  9449063 actctttaagcaactcaaatttagtaattattc-ttttaaaaatcaactattataattttcaatacattcaatacacaacttttcattaaaaacttacca 9448965  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||| ||||    
T  9448964 tttaaagtgtttaa 9448951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 15505540 - 15505648
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||| || ||| ||||||||||||||| || ||||| | |||| ||| |||||  ||| ||||| ||||||| ||||||| |  ||| ||||||    
T  15505540 actctttaagtatttcaaatttaataattattctttcaaaaagtaaactattataattttcaatacattcaatacacaacttttcattccaaacttacta 15505639  T
Q  231 tttaaagtg 239  Q
    |||||||||    
T  15505640 tttaaagtg 15505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 29239325 - 29239235
Alignment:
Q  165 tttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccg 255  Q
    |||||||| | |||| |||||||||  ||||||||| ||||||   |||||| |||| |||||||| |||||||||||||  |||||||||    
T  29239325 tttaaaaagtcaactattacaattttcaatgcattcaatacaccatttttcattaaagatttactaattaaagtgcttaaagagtgtcccg 29239235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 37993092 - 37993179
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaa 236  Q
    ||||||||| ||||| || ||||||| |||| |||||||||  ||||||||  ||||| |  |||| | |||||||||||||||||||    
T  37993092 atttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaa 37993179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 20064882 - 20065019
Alignment:
Q  107 tcttgttaaagagtgcc-ctcgggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatac 205  Q
    ||||||||| ||||||| || ||| |||||||||| |||  | || || ||||||||| |||||||| | |||| |||||||||  |||| |||  ||||    
T  20064882 tcttgttaacgagtgcctctagggcactctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaaatac 20064981  T
Q  206 acatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    |||  |||||| |||||  || |||||||||||||||||    
T  20064982 acaatttttca-taaaacctttctatttaaagtgcttaa 20065019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 41933131 - 41933240
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactattta 234  Q
    ||||| ||| ||| |||||  |||||||| |||||||| | |||| |||||||||  |||||| ||  || ||| ||||| |  |||||||||||| |||    
T  41933131 tttaaacatatcaaatttagcaattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaatta 41933230  T
Q  235 aagtgcttaa 244  Q
    ||||||||||    
T  41933231 aagtgcttaa 41933240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 48180281 - 48180131
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||| |  |||||| |||||||| |||||||| | |||| |||||||||| |||||||| | ||| || | |||||  ||||| ||||||    
T  48180281 actctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttacta 48180182  T
Q  231 tttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    ||||||||| | ||  ||||| ||| | ||| |||||||||||||||||||    
T  48180181 tttaaagtgataaaagagtgttccggagatattcgttaacatttcccttat 48180131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 29083986 - 29083896
Alignment:
Q  155 taattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta-tttaaagtgcttaa 244  Q
    ||||||||| |||||||| | |||| ||||||||| |||||||||  ||||||| |||||||||||||| |||||| ||||||||||||||    
T  29083986 taattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgcttaa 29083896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 40673448 - 40673543
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||| ||||||| |||||||| | |||| ||||||||||||||  |||| ||||||  ||||||  |||||| |||  |||||||||||||||    
T  40673448 atttaatcattattcttttaaaaattcaactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 12086876 - 12086727
Alignment:
Q  128 ggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaattta 227  Q
    |||||| ||||| ||| ||| ||||| ||||||||| ||| ||||   | || ||| |||||  | ||||||| |||||||| |||||| |||||| |||    
T  12086876 ggtactttttaatcatttcaaatttagtaattattctttttaaaagacatctattataattttcagtgcattcaatacacattttttcattaaaaactta 12086777  T
Q  228 ctatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttccc 277  Q
    ||||||  ||| |||||  ||||||||||    |||||||||||||||||    
T  12086776 ctatttcgagtacttaaatagtgtcccgagggcactcgttaacatttccc 12086727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 51351291 - 51351396
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaag 248  Q
    ||||||||||||||| |||||||| |  | | ||| |||||| ||| ||||  |||||||  |||||| |||||| ||||| ||||||||||||||  ||    
T  51351291 atttaataattattcttttaaaaagtttagtattataatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaagag 51351390  T
Q  249 tgtccc 254  Q
    ||||||    
T  51351391 tgtccc 51351396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 45988310 - 45988267
Alignment:
Q  156 aattattcatttaaaaaatgaactgttacaatttctaatgcatt 199  Q
    |||||||| |||||||||| |||| |||||||||||||||||||    
T  45988310 aattattcttttaaaaaatcaactattacaatttctaatgcatt 45988267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 43803941 - 43803977
Alignment:
Q  107 tcttgttaaagagtgccctcgggtactctttaagcat 143  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  43803941 tcttgttaacgagtgtcctcgggtactctttaagcat 43803977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 49362460 - 49362400
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatg 195  Q
    ||||| |||| || ||||||||||||||| |||||||| | |||| |||||||||| ||||    
T  49362460 tttaaacatcccaaatttaataattattcttttaaaaagttaactattacaatttccaatg 49362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 1840979 - 1841084
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||| | | ||||||||||||||| |||||||||| |||| |||||||||| ||||||||| ||||||| ||||| | |||||| |||  |    
T  1840979 actctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatca 1841078  T
Q  231 tttaaa 236  Q
    ||||||    
T  1841079 tttaaa 1841084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 7421686 - 7421811
Alignment:
Q  149 atttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaag 248  Q
    ||||| |||||||| ||||||||| | || | |||||||||  ||||||||  ||||||| ||||| ||||||| |||||||||||||||||||||  ||    
T  7421686 atttagtaattatttatttaaaaagtcaaatattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaagag 7421785  T
Q  249 tgtcccgaaaatactcgttaacattt 274  Q
    |||| |   || ||||||||||||||    
T  7421786 tgtcacaggaacactcgttaacattt 7421811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 31855084 - 31855198
Alignment:
Q  165 tttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactc 264  Q
    |||||||| | |||| |||||||||| ||||||||| ||| |||  |||||| |||||| ||||||||||||||||||||  ||| ||||||| | |       
T  31855084 tttaaaaagtcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaagagtatcccgaatacatat 31855183  T
Q  265 gttaacatttccctt 279  Q
    |||||||||||||||    
T  31855184 gttaacatttccctt 31855198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 32823693 - 32823821
Alignment:
Q  151 ttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtg 250  Q
    ||||||||||||| ||| |||| | || | |||||||||  ||||||||| ||||||| ||||||| |||||| ||  ||||||||||||||||  ||||    
T  32823693 ttaataattattcttttgaaaagtcaattattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtg 32823792  T
Q  251 tcccgaaaatactcgttaacatttccctt 279  Q
      ||| |   |||||||||||||||||||    
T  32823793 ctccggaggcactcgttaacatttccctt 32823821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 26669389 - 26669291
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    ||||||||||||  ||||||||||||||||||| |||||||| | |||| |||||||||  | || |||  ||||| | ||||||| ||||||||||||    
T  26669389 actctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttact 26669291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 17215789 - 17215650
Alignment:
Q  135 tttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactattta 234  Q
    ||||||||| | | ||||| ||||||||  |||||||| | |||| |||||||||  ||||||||| ||| |||  |||| | |||||| |||| |||||    
T  17215789 tttaagcatttaaaatttagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccattta 17215690  T
Q  235 aagtgcttaagaagtgtcccgaaaatactcgttaacattt 274  Q
    ||||||||||  ||||  |||||   ||||||||||||||    
T  17215689 aagtgcttaaagagtgatccgaaggcactcgttaacattt 17215650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 30801798 - 30801887
Alignment:
Q  192 aatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaaatactcgttaacatttcccttat 281  Q
    ||||||||| ||||||| ||||| | |||||| || |||||||||||||||||  | |||||||    ||||||||||||||| ||||||    
T  30801798 aatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaagaatgtcccgggggtactcgttaacattttccttat 30801887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 34232091 - 34231980
Alignment:
Q  106 ttcttgttaaagagtgccctcg-ggtactctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgata 204  Q
    |||||||||| ||||||||  | || ||||||||| ||||| | ||||||||||||||| || ||||||  ||||||| ||||||  |||| |||  |||    
T  34232091 ttcttgttaacgagtgccccggaggcactctttaaccatcttaaatttaataattattctttaaaaaaaataactgttgcaattttcaatgtatttaata 34231992  T
Q  205 cacatcttttca 216  Q
    |||| |||||||    
T  34231991 cacaacttttca 34231980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 2692540 - 2692428
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||| |||  | ||||| ||||||||  |||||||| | |||| |||||||||| |||| | |  ||||||| ||||| | ||||| |||||||    
T  2692540 actctttaagaatccaaaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtgaatacacaactttttattaaaa-tttacta 2692442  T
Q  231 tttaaagtgcttaa 244  Q
    ||||||||| ||||    
T  2692441 tttaaagtgtttaa 2692428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 19293563 - 19293450
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||  | |||||| |||||||  |||||||| | |||| ||||||||||  ||||| || |||  || |||||||  |||||  |||||    
T  19293563 actctttaagcatcctaaatttaacaattattattttaaaaagttaactattacaatttccgatgcactcaataaccaacttttcataaaaaacctacta 19293464  T
Q  231 tttaaagtgcttaa 244  Q
     |||||||||||||    
T  19293463 attaaagtgcttaa 19293450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 28874395 - 28874500
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||  | | ||| ||||||||| ||| |||||| |||| ||| |||||| ||||||||| ||||| |  |||||| |||||| ||  ||    
T  28874395 actctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgtta 28874494  T
Q  231 tttaaa 236  Q
    ||||||    
T  28874495 tttaaa 28874500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 27778812 - 27778862
Alignment:
Q  192 aatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaa 244  Q
    ||||||||| |||||||| |||||| ||||||||||| |||||||||||||||    
T  27778812 aatgcattcaatacacat-ttttca-taaaaatttaccatttaaagtgcttaa 27778862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 1404 - 1502
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttact 229  Q
    ||||||||||||  ||||||||||||||||||| |||||||| | |||| |||||||||  | || |||  ||||| | ||||||| ||||||||||||    
T  1404 actctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttact 1502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 103759 - 103646
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    |||||||||||||||   ||||| ||||||||| |||||||| |  | | ||||||||| |||||||||| ||| |||  |||||| |||||||||| ||    
T  103759 actctttaagcatctttgatttagtaattattcttttaaaaagtcgaatattacaatttttaatgcattcaatatacaatttttcattaaaaatttatta 103660  T
Q  231 tttaaagtgcttaa 244  Q
    ||| || |||||||    
T  103659 ttttaaatgcttaa 103646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 20330 - 20215
Alignment:
Q  159 tattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttactatttaaagtgcttaagaagtgtcccgaaa 258  Q
    ||||| |||||||| | |||| |||||||||| ||||||||  ||||||| ||||||| |||||| |||  |||||||||||||||  ||||||  |||     
T  20330 tattcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttca-taaaaacttatcatttaaagtgcttaaagagtgtcatgaag 20232  T
Q  259 atactcgttaacatttc 275  Q
      |||||||||||||||    
T  20231 gcactcgttaacatttc 20215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 335950 - 335863
Alignment:
Q  139 agcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaattt 226  Q
    |||||| || ||||| ||||||||||||| |||| | || | ||| |||||  |||| |||||||||||| ||||||| |||||||||    
T  335950 agcatcccaaatttagtaattattcatttcaaaagttaattattataattttcaatgtattcgatacacaacttttcattaaaaattt 335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 1061 - 1166
Alignment:
Q  131 actctttaagcatctcatatttaataattattcatttaaaaaatgaactgttacaatttctaatgcattcgatacacatcttttcaataaaaatttacta 230  Q
    ||||||||||||||  | | ||| ||||||||| ||| |||||| |||| ||| |||||| ||||||||| ||||| |  |||||| |||||| ||  ||    
T  1061 actctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgtta 1160  T
Q  231 tttaaa 236  Q
    ||||||    
T  1161 tttaaa 1166  T

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