View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_53 (Length: 291)
Name: NF14289_low_53
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 14237564 - 14237314
Alignment:
| Q |
24 |
atttgttgaaaagaaaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14237564 |
atttgttgaaaagaaaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaat |
14237465 |
T |
|
| Q |
124 |
aggcgttggataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaattttattgaacataaatactc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14237464 |
aggcgttggataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaattttattgaacataaatactc |
14237365 |
T |
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| Q |
224 |
tttgaagactttaatataagcaaaaaggtacatctattcggcccaaatata |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14237364 |
cttgaagactttaatataagcaaaaaggtacatctattcggcccaaatata |
14237314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 38 - 260
Target Start/End: Original strand, 14377709 - 14377931
Alignment:
| Q |
38 |
aaaatgcaataacagtgacacttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataag |
137 |
Q |
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| T |
14377709 |
aaaatgcaatgacaatgacccttggttttgaacaaaattttagacatgtgattgttcttcaaatactgatttacattctttaaaataggccttggataag |
14377808 |
T |
|
| Q |
138 |
tgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaattttattgaacataaatactctttgaagactttaa |
237 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| || |
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| T |
14377809 |
tgtcaactgggagatgaagttagaaagaatgaaggaaagcttgactcttcaggtttgtcttctaattttattgaacataaatactccttgcagacttaaa |
14377908 |
T |
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| Q |
238 |
tataagcaaaaaggtacatctat |
260 |
Q |
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||||||||||| ||||||||||| |
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| T |
14377909 |
tataagcaaaagggtacatctat |
14377931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 41435425 - 41435258
Alignment:
| Q |
40 |
aatgcaataacagtgacacttggttt-tgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataagt |
138 |
Q |
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|||||||| |||||| ||||||| || || | ||||| ||| |||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |
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| T |
41435425 |
aatgcaatgacagtggcacttgggttctgtgaaaaatattagacttgtaattgttcttcaaatactgatttacattctttaaaataggctttggataagt |
41435326 |
T |
|
| Q |
139 |
gccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaatttt |
206 |
Q |
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| T |
41435325 |
gtcaactgggagacgaagttcgaaagaaagaaggaaagcttgactcttcaggtttgtattctaatttt |
41435258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 41448639 - 41448458
Alignment:
| Q |
42 |
tgcaataacagtgacacttggttt-tgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataagtgc |
140 |
Q |
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|||||| |||||| ||||||| || || | ||||| ||| |||||||| |||||||||||||||| ||||| |||| |||| ||||| ||||||||||| |
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| T |
41448639 |
tgcaatgacagtggcacttgggttctgtgaaaaatattagacttgtaattgttcttcaaatactgatttaccttctttaaa-taggctttggataagtgt |
41448541 |
T |
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| Q |
141 |
caactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaattttattgaacataaatactc |
223 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||| |
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| T |
41448540 |
caactgggagatgaagttcgaaagaaagaaggaaagcttgactcttcaggtttgtattctaattttgttgaacacaaacactc |
41448458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 41442494 - 41442345
Alignment:
| Q |
69 |
gcaaaattttatacttgtaactgttcttcaaatactggtttacattctgtaaaataggcgttggataagtgccaactgggagatgaagttagaaagaaag |
168 |
Q |
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||||||| ||| |||||||| |||||||||||||||| | |||||| | |||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
41442494 |
gcaaaatattagacttgtaattgttcttcaaatactgatctacattttttaaaataggctttggataagtgtcaactgggagaggaagttcgaaagaaag |
41442395 |
T |
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| Q |
169 |
aaggaaagcttgactcttcaggtttgttttctaattttattgaacataaa |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||| || |||||||| |
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| T |
41442394 |
aaggaaagcttgactcttcaggtttgtcttctaattttgttaaacataaa |
41442345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 58 - 253
Target Start/End: Complemental strand, 32118254 - 32118060
Alignment:
| Q |
58 |
cttggttttgagcaaaattttatacttgtaactgttcttcaaatactggtttacattctgt-aaaataggcgttggataagtgccaactgggagatgaag |
156 |
Q |
| |
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||||||||||| |||| |||| |||||||| ||||||||||||||| ||||| |||| | ||||||||| ||||||||||| |||||||||||||||| |
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| T |
32118254 |
cttggttttgaacaaattttttgacttgtaattgttcttcaaatactaatttacgttcttttaaaataggccttggataagtgtcaactgggagatgaag |
32118155 |
T |
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| Q |
157 |
ttagaaagaaagaaggaaagcttgactcttcaggtttgttttctaattttattgaacataaatactctttgaagactttaatataagcaaaaaggta |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||| |||| | |||||||||||||||||| |
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| T |
32118154 |
ttagaaagaaagaaggaaagcttgactcttcaggtt-gccttc-aattttattgaatataaatactctcctcagacataaatataagcaaaaaggta |
32118060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 22666881 - 22666819
Alignment:
| Q |
132 |
gataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttg |
194 |
Q |
| |
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|||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||| |
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| T |
22666881 |
gatatgtgccaacttggagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttg |
22666819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 22723520 - 22723458
Alignment:
| Q |
132 |
gataagtgccaactgggagatgaagttagaaagaaagaaggaaagcttgactcttcaggtttg |
194 |
Q |
| |
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|||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||| |
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| T |
22723520 |
gatatgtgccaacttggagatgaagtgaggaagaaagaaggaaagcttgactctacaggtttg |
22723458 |
T |
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