View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_low_64 (Length: 255)

Name: NF14289_low_64
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_low_64
NF14289_low_64
[»] chr5 (2 HSPs)
chr5 (72-234)||(30885285-30885447)
chr5 (1-81)||(30885492-30885575)
[»] chr7 (1 HSPs)
chr7 (148-229)||(38094697-38094779)
[»] chr4 (2 HSPs)
chr4 (146-226)||(19594043-19594124)
chr4 (146-194)||(36835134-36835182)
[»] chr2 (3 HSPs)
chr2 (146-224)||(26179092-26179171)
chr2 (165-241)||(2758463-2758539)
chr2 (165-236)||(26179624-26179695)
[»] chr3 (2 HSPs)
chr3 (165-246)||(47955221-47955302)
chr3 (165-246)||(47956100-47956181)
[»] chr8 (2 HSPs)
chr8 (166-241)||(32018194-32018269)
chr8 (165-217)||(25989860-25989912)
[»] chr1 (2 HSPs)
chr1 (170-241)||(38003594-38003665)
chr1 (165-241)||(38002940-38003016)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 30885447 - 30885285
Alignment:
Q  72 tgtacaattgtattttgatcaaataaaaatccaatttgagaggatgagtgaaagtggaaaagttatttaaccgactaacagtgttaaatggaggggaggt 171  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30885447 tgtacaattgtattttaatcaaataaaaatccaatttgagaggatgagtgaaagttgaaaagttatttaaccgactaacagtgttaaatggaggggaggt 30885348  T
Q  172 taatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtga 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  30885347 taatgtttagttgaaaactagaggacgtgttagtgcattttaagaaggcctcaagggaagtga 30885285  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30885575 - 30885492
Alignment:
Q  1 aaatttggtgttttgtaaattatta---cattctttgatgatcttaaagacaaactgctttgaagaaactcatgtgtacaattg 81  Q
    |||||||||||||||||||||||||   |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30885575 aaatttggtgttttgtaaattattatgacattcgatgatgatcttaaagacaaactgctttgaagaaactcatgtgtacaattg 30885492  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 38094779 - 38094697
Alignment:
Q  148 aacagtgttaaatg-gaggggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaaggga 229  Q
    |||||||| ||||| || ||||||||||||||| ||| |||||||||||  ||||||||||| ||||||||||||||||||||    
T  38094779 aacagtgtgaaatgagaagggaggttaatgttttgttcaaaactagagggggtgttagtgctatttaagaagacctcaaggga 38094697  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 19594124 - 19594043
Alignment:
Q  146 ctaacagtgttaaatg-gaggggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaag 226  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||||||  |||| | |||| |||||||||||||||||    
T  19594124 ctaacagtgttaaatgagaagggaggttaatgtttagttcaaaactagagggggtgtaaatgctatttaagaagacctcaag 19594043  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 36835182 - 36835134
Alignment:
Q  146 ctaacagtgttaaatggaggggaggttaatgtttagttgaaaactagag 194  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  36835182 ctaacggtgttatatggaggggaggttagtgtttagttgaaaactagag 36835134  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 26179171 - 26179092
Alignment:
Q  146 ctaacagtgttaaatg-gaggggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctca 224  Q
    |||||||||||||||| || ||||||||||||||| ||| ||||||| |||  ||||||||||| |||||||||||||||    
T  26179171 ctaacagtgttaaatgagaagggaggttaatgttttgttcaaaactaaagggagtgttagtgctatttaagaagacctca 26179092  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 2758463 - 2758539
Alignment:
Q  165 gggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagtataat 241  Q
    ||||||||| ||||||||| |||| ||||||   |||||||| | ||||||||||||| |||||| |||||| ||||    
T  2758463 gggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaat 2758539  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 26179624 - 26179695
Alignment:
Q  165 gggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagt 236  Q
    ||||||||  ||||||||| |||||||||||  ||||| ||| | |||||||| ||||||||||| ||||||    
T  26179624 gggaggtttgtgtttagtttaaaactagagggggtgtttgtgttatttaagaaaacctcaagggaggtgagt 26179695  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 47955302 - 47955221
Alignment:
Q  165 gggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagtataatctacc 246  Q
    |||||||||||||||| || |||||||||||  ||||||||||| |||||||| || |||||||| |||||| |||| ||||    
T  47955302 gggaggttaatgtttatttcaaaactagagggggtgttagtgctatttaagaaaacttcaagggaggtgagtgtaatttacc 47955221  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 47956100 - 47956181
Alignment:
Q  165 gggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagtataatctacc 246  Q
    ||||| ||| |||||||||  ||||||||||  ||||||||||| ||||||||||||||||| || |||||| |||| ||||    
T  47956100 gggagattagtgtttagttttaaactagagggggtgttagtgctatttaagaagacctcaagagaggtgagtgtaatttacc 47956181  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 32018269 - 32018194
Alignment:
Q  166 ggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagtataat 241  Q
    |||||||| ||||||||| |||| ||||||   |||||||| | |||||||||||||||| | |||||||| ||||    
T  32018269 ggaggttagtgtttagttaaaaattagagggaatgttagtgttatttaagaagacctcaaagaaagtgagtgtaat 32018194  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 25989860 - 25989912
Alignment:
Q  165 gggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaa 217  Q
    ||||||||  ||||||||||||||||| |||  ||||||||| ||||||||||    
T  25989860 gggaggtttgtgtttagttgaaaactaaagggggtgttagtgttttttaagaa 25989912  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 38003594 - 38003665
Alignment:
Q  170 gttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagtataat 241  Q
    |||| ||||||||| |||| ||||||   |||||||||| ||||||||||||| |||||| |||||| ||||    
T  38003594 gttagtgtttagttaaaaagtagaggggttgttagtgctatttaagaagaccttaagggaggtgagtgtaat 38003665  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 38003016 - 38002940
Alignment:
Q  165 gggaggttaatgtttagttgaaaactagaggacgtgttagtgctttttaagaagacctcaagggaagtgagtataat 241  Q
    ||||||| | |||||| || |||||||||||   |||||||||| |||||||| |||| |||||| |||||| ||||    
T  38003016 gggaggtaagtgtttaattaaaaactagaggggatgttagtgctatttaagaaaacctaaagggaggtgagtgtaat 38002940  T

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