View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_69 (Length: 249)
Name: NF14289_low_69
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2789880 - 2789649
Alignment:
| Q |
1 |
aacaaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaaactttgaa |
100 |
Q |
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| T |
2789880 |
aacaaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaaactttgaa |
2789781 |
T |
|
| Q |
101 |
acagcctttggaagttccatggaaagattgtcagcaacttcctgtcaaatcaacaaacaatcaataaggcactcttggttgctcactcttttcaatagaa |
200 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
2789780 |
acagcctttggcagttccatggaaagattgtcaacaacttcctgtcaaatcaacaaacaatcaataaggcactcttggtcgctcactctcttcaatagaa |
2789681 |
T |
|
| Q |
201 |
cttacataatattgtagcttggaagttaatag |
232 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
2789680 |
cttacatgatattgtagcttggaagttaatag |
2789649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 2416795 - 2416930
Alignment:
| Q |
97 |
tgaaacagcctttggaagttccatggaaagattgtcagcaacttcctgtcaaatcaacaaacaatcaataaggcactcttggttgctcactcttttcaat |
196 |
Q |
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||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2416795 |
tgaaacagcctttggcagttcaatggaaagattgtcaacaacttcctgtcaaatcaacaaacaatcaataaggcactcttagttgctcactctcttcaat |
2416894 |
T |
|
| Q |
197 |
agaacttacataatattgtagcttggaagttaatag |
232 |
Q |
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| T |
2416895 |
agaacttaaatgatattgtagcttgcaagttaatag |
2416930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 2403740 - 2403834
Alignment:
| Q |
4 |
aaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaaactttg |
98 |
Q |
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| T |
2403740 |
aaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgacagcaaactttg |
2403834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 4244763 - 4244630
Alignment:
| Q |
19 |
tggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaaactttgaaacagcctttggaagttcc |
118 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||||||||||| | ||| |
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| T |
4244763 |
tggaccacattttgctatgaactgatcaatgatgctaattgccatgtccgaaaatttgcttgaaataccagcaaactttgaaacagcctttggcacttca |
4244664 |
T |
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| Q |
119 |
atggaaagattgtcagcaacttcctgtcaaatca |
152 |
Q |
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| T |
4244663 |
aaggaaagagcatcaacaacttcctgtcaaatca |
4244630 |
T |
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