View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_7 (Length: 651)
Name: NF14289_low_7
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 45147213 - 45147586
Alignment:
| Q |
18 |
aaacttttacattttgatctgcaaaattgagaagaaaggaaaatattagagctctttttgttctagtgataaaataaacgctacagaaagtattacggaa |
117 |
Q |
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| T |
45147213 |
aaacttttacattttgatctgcaaaattgagaagaaaggaaaatattagagccctttttgttctagtgataaaataaacgctacagaaagtattacggaa |
45147312 |
T |
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| Q |
118 |
ttttttgaaaatgcattttaatgaaaattctgaaaatgtattttctcgagtttgcttgaatcttttctctatcacaattaagaaagaaaattcataatca |
217 |
Q |
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| T |
45147313 |
ttttttgaaaatgcattttaatgaaaattctgaaaatgtattttctcgagtttgcttgaatcttttctctatcacaattaagaaagaaaattcataatca |
45147412 |
T |
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| Q |
218 |
tatgtcatattatctacccacgtacactgaaaatgttgttagaaagtaaatgtgtccttacttgtttgctgttgagtgaaaaatgttaatgtcatgaatg |
317 |
Q |
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| T |
45147413 |
tatgtcatattatctacccacgtacactgaaaatgttgttagaaagtaaatgtgtccttacttgtttgctgttgagtgaaaaatgttaatgtcatgaatg |
45147512 |
T |
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| Q |
318 |
gttcctgctttaatgcctctttttgataaacatttctatccaaagactcattgactgttttataggtagaagat |
391 |
Q |
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| T |
45147513 |
gttcctgctttaatgcctctttttgataaacatttctatccaaagactcattgaccgttttataggtagaagat |
45147586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 418 - 637
Target Start/End: Original strand, 45147613 - 45147831
Alignment:
| Q |
418 |
gaagcgaacaactctttataatgattctgaannnnnnnagggactttggggaggtatgatatgtggaattctcctccagaccttgctgctctcggggata |
517 |
Q |
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| T |
45147613 |
gaagcgaacaactctttctaatgattctgaatttttttagggactttggggaggtatgatatgtggaattctcctccagaccttgctgctctcggggata |
45147712 |
T |
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| Q |
518 |
ctttacaaaaccaattggaacaaagaggtaggcaatacttctcattctaaaactcatgttggattttctcgcttgactacaacagaaaaatgatattgat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45147713 |
ctttacaaaaccaattggaacaaagaggtaggcaatacttctcattctaagactcatgttggattttctcgcttgactacaacagaaaaatg-tattgat |
45147811 |
T |
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| Q |
618 |
caccctttttctatcctatg |
637 |
Q |
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| T |
45147812 |
caccctttttctatcctatg |
45147831 |
T |
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