View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_low_70 (Length: 246)

Name: NF14289_low_70
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_low_70
NF14289_low_70
[»] chr3 (3 HSPs)
chr3 (1-243)||(11752039-11752280)
chr3 (42-121)||(47395601-47395680)
chr3 (70-211)||(36834078-36834219)
[»] chr1 (4 HSPs)
chr1 (67-180)||(32920196-32920308)
chr1 (69-122)||(45921141-45921194)
chr1 (38-120)||(35601259-35601341)
chr1 (42-103)||(28562179-28562240)
[»] chr4 (1 HSPs)
chr4 (42-122)||(54475418-54475498)
[»] chr2 (3 HSPs)
chr2 (42-106)||(35133242-35133306)
chr2 (42-118)||(40330239-40330315)
chr2 (42-106)||(19267476-19267540)
[»] chr8 (1 HSPs)
chr8 (42-115)||(8622605-8622678)
[»] chr7 (1 HSPs)
chr7 (42-106)||(22902010-22902074)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11752039 - 11752280
Alignment:
Q  1 atgcttcggagtatcatgcttatgctgatttaatacaaatacaagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagaga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11752039 atgcttcagagtatcatgcttatgctgatttaatacaaatacaagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtccgagaga 11752138  T
Q  101 aggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactcatcctactcctccaaacgtcctcctatctttgatc 200  Q
    ||||||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  11752139 aggaaatcaatgtgctgacttcatggttaaatttggagcat-ctcgaatgacgatttttccactcatcctactcctccaaatgacctcctatctttgatc 11752237  T
Q  201 aggatcgacgccgtggaaacctactttcctagagcctatgctt 243  Q
    |||||||| ||| ||| ||||||||| ||||||||||| ||||    
T  11752238 aggatcgatgccatgggaacctacttccctagagcctaggctt 11752280  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 47395680 - 47395601
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgactt 121  Q
    ||||||||||| |||||||| |||||||| ||||||||  || |||| ||||| |||||||| ||| ||||||| |||||    
T  47395680 caagatattaaggatctcttttccacaagcaatttctccgtttatcactgtctcagagaagggaatcaatgtgcagactt 47395601  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 36834219 - 36834078
Alignment:
Q  70 gaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactcatcc 169  Q
    |||| ||||| ||||||||||| ||  ||||||| ||| ||||||| ||||||  || |||  ||| |||  |||||||||| || ||| |||  |||      
T  36834219 gaaacttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaagaatttgccagccatgt 36834120  T
Q  170 tactcctccaaacgtcctcctatctttgatcaggatcgacgc 211  Q
    |||||||||||  | ||||||  |||||||||||||||||||    
T  36834119 tactcctccaagtgacctccttcctttgatcaggatcgacgc 36834078  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 32920308 - 32920196
Alignment:
Q  67 caagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactca 166  Q
    ||||||||||||| ||||| |||||||| | |||||||||  |||||| |||||||| || |||||| | ||| |  || |||||||||||||| || ||    
T  32920308 caagaaatttctctattcagcattgtctcatagaaggaaaccaatgtgttgacttcatggctaaattaggagc-ttttctaatgaggatttttctaccca 32920210  T
Q  167 tcctactcctccaa 180  Q
    ||||||||||||||    
T  32920209 tcctactcctccaa 32920196  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 45921194 - 45921141
Alignment:
Q  69 agaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttc 122  Q
    ||||| ||||| |||||||||||||| |||||||||||| ||||| ||||||||    
T  45921194 agaaacttctctattcatcattgtctcagagaaggaaatcaatgtactgacttc 45921141  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 35601259 - 35601341
Alignment:
Q  38 aatacaagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgact 120  Q
    ||||||||| || ||||| ||||||||| ||||||  ||| | ||||||||||||||  | ||||||||| ||||| ||||||    
T  35601259 aatacaagacataaaagacctcttgtcctcaagaagcttcaccattcatcattgtctccgtgaaggaaatcaatgtactgact 35601341  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 28562240 - 28562179
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaagg 103  Q
    ||||| || ||||| ||||| || |||||||||||||| || ||||||||||| ||||||||    
T  28562240 caagacatcaaagacctcttttcaacaagaaatttctccatccatcattgtctaagagaagg 28562179  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 54475498 - 54475418
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttc 122  Q
    ||||| ||||| |||||| | ||| ||||||||||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  54475498 caagacattaaggatctcctttcctcaagaaatttctccattcatcattgtcttagagaagggaatcaatgtgccgacttc 54475418  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 35133306 - 35133242
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 106  Q
    |||||||| | ||||||||||||| |||| |||||| | |||||||||||||| |||||||||||    
T  35133306 caagatatcagagatctcttgtcctcaaggaatttcaccattcatcattgtctaagagaaggaaa 35133242  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 40330239 - 40330315
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctga 118  Q
    |||||||| | ||||||||||||| |||| |||||| |  ||||||||||||| |||||||||||  ||||||||||    
T  40330239 caagatatcagagatctcttgtcctcaaggaatttcaccgttcatcattgtctaagagaaggaaaccaatgtgctga 40330315  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 19267476 - 19267540
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 106  Q
    ||||| || ||||||||||||||| |||| |||||| |  |||||||||| || |||||||||||    
T  19267476 caagacatcaaagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaa 19267540  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 8622605 - 8622678
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgc 115  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||  |||| || |||||||  ||| |||||||    
T  8622605 caagatattaaagatctcttgtcaacaaggaatttctccattcactattgcctcagagaagagaatcaatgtgc 8622678  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 22902074 - 22902010
Alignment:
Q  42 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 106  Q
    |||||||| ||||||||||||||  |||| |||||| |  ||||||||||||| |||||||||||    
T  22902074 caagatatcaaagatctcttgtcttcaaggaatttcaccgttcatcattgtctaagagaaggaaa 22902010  T

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