View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_71 (Length: 246)
Name: NF14289_low_71
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 43856059 - 43855908
Alignment:
| Q |
95 |
taatacaaacatttcttt-acataaacaagcacaatgattgcactttattaatgattgtatagcataagttttcttctcctaaatcactccattttttct |
193 |
Q |
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| T |
43856059 |
taatacaaacattttttttacataaacaaacacaatgat-gcactttattaatgattgtataacgtaagtcttcttctcctaaatcactccattttttct |
43855961 |
T |
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| Q |
194 |
tgaaaacaaaatcactccattttatgagaaagctaaaattgaattgccctccc |
246 |
Q |
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| T |
43855960 |
tgaaaacaaaatcactccattttctaagagagctaaaattgaactgccctccc |
43855908 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 14196180 - 14196085
Alignment:
| Q |
57 |
atggggttagataaggagaaagaatgtgtgatagtatataatacaaac--atttctttacataaacaagcacaatgattgcactttattaatgattg |
151 |
Q |
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| T |
14196180 |
atggggttacataaggagaaagagtgtataatagtataatatacaaacttctttttttacataaacaagtacaatga-tgcattttattaatgattg |
14196085 |
T |
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