View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_76 (Length: 235)
Name: NF14289_low_76
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 3050148 - 3049913
Alignment:
| Q |
4 |
tatctaagtgcaattgattaagttcaccatcaactactatcgtgtt------------------aagatgtgacctgaaaaaatggttataagagggaga |
85 |
Q |
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| T |
3050148 |
tatctaagtgcaattgattaagttcaccatcaactcctatcgtgttaagagtctcacatctgataagaggtgacctgaaaaaatggttataagagggaga |
3050049 |
T |
|
| Q |
86 |
catccatcaccttacagcccgattaatacaaggttgacttaggtctaacccgaattttatgatatcgagcttcaaccctataaactgcgcttacaactca |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3050048 |
catccatcaccttacagcccgattaatacaaggttgacttaggtctaacccgaatattatgatatcgagcttcaaccctataaactgcgcttacaactca |
3049949 |
T |
|
| Q |
186 |
ctaaactaacacttcagcatccattgaagttccttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3049948 |
ctaaactaacacttcagcatccattgaagttccttt |
3049913 |
T |
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