View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_77 (Length: 233)
Name: NF14289_low_77
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2489399 - 2489183
Alignment:
| Q |
1 |
tacagtttggtttagttggtgtttcctacgctattcggacgagaatttctttggagacatgcatggaataacaaatgctttcacaaatgtcactgatgtc |
100 |
Q |
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| T |
2489399 |
tacagtttggtttagttggtgtttcctacgctattcggacgagaatttctttggagacatgcatggaataacaaatgctttcacaaatgtcactgatgtc |
2489300 |
T |
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| Q |
101 |
gatgacccttctttggtatcacaatggttacctttcatgagtggagtagcagctgcagcttcagagaactcattcatgttccacacagaagaactgaact |
200 |
Q |
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| T |
2489299 |
gatgacccttctttggtatcacaatggttacctttcatgagtggagtagcagctgcagcttcagagaactcattcatgttccacacagaagaactgaact |
2489200 |
T |
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| Q |
201 |
ttaatcaaagtgagaag |
217 |
Q |
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| T |
2489199 |
ttaatcaaagtgagaag |
2489183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 2495805 - 2495594
Alignment:
| Q |
6 |
tttggtttagttggtgtttcctacgctattcggacgagaatttctttggagacatgcatggaataacaaatgctttcacaaatgtcactgatgtcgatga |
105 |
Q |
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| T |
2495805 |
tttggtttagatggtgtttcctacgctattcaaacgagagcttcttcggagacatgcaaggaacagcaacggcaatcacaaatgaaactgatattgatga |
2495706 |
T |
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| Q |
106 |
cccttctttggtatcacaatggttacctttcatgagtggagtagcagctgcagcttcagagaactcattcatgttccacacagaagaactgaactttaat |
205 |
Q |
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| T |
2495705 |
cccttctttggtttcacaagggttatccttcatgagcggagtagcagctgcagcttcggagaaatcattcatgttccacacagaagtactgaactttaat |
2495606 |
T |
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| Q |
206 |
caaagtgagaag |
217 |
Q |
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| T |
2495605 |
caaagtgagaag |
2495594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 2492583 - 2492467
Alignment:
| Q |
101 |
gatgacccttctttggtatcacaatggttacctttcatgagtggagtagcagctgcagcttcagagaactcattcatgttccacacagaagaactgaact |
200 |
Q |
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||||| |||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
2492583 |
gatgatccttctgtggtttcacaagggttacctttcatgagtggagtagcagctacagcttcagagaaatcattaatgttccacacagaagtactgaact |
2492484 |
T |
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| Q |
201 |
ttaatcaaagtgagaag |
217 |
Q |
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| T |
2492483 |
tcaatcaaagtgagaag |
2492467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 2492677 - 2492618
Alignment:
| Q |
4 |
agtttggtttagttggtgtttcctacgctattcggacgagaatttctttggagacatgca |
63 |
Q |
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||||| |||||| |||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
2492677 |
agttttgtttagatggtgtttcctacgctattcaaacgagagcttctttggagacatgca |
2492618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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