View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_low_78 (Length: 214)
Name: NF14289_low_78
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_78 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 6214320 - 6214501
Alignment:
| Q |
14 |
ataatactgtagtaggttatctataagtggcttaaagttcttaattagtatatattgtaatagtgatatatattaatgtttctttacctcttttccagtg |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6214320 |
ataataatgtagtaggttatctataagtggcttaaagttcttaattagtatatattgtaatagtgatatatattaatgtttctttacctcttttccagtg |
6214419 |
T |
|
| Q |
114 |
taccatggacgccatgctgtatgtacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgtccat |
195 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6214420 |
taccatggacgccatgctgtacgtacatgtagttttaaggaatttattgaatactttgttgagattatgggaacacgtccat |
6214501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 6176895 - 6176995
Alignment:
| Q |
95 |
ctttacctcttttccagtgtaccatggacgccatgctgtatgtacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgtcca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6176895 |
ctttacctcttttccagtgtaccatggacgccatgctgtatgcacaggcagttttaaggaatttattgaatactttgttgaggttataggaacacgtcca |
6176994 |
T |
|
| Q |
195 |
t |
195 |
Q |
| |
|
| |
|
|
| T |
6176995 |
t |
6176995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 6206706 - 6206805
Alignment:
| Q |
96 |
tttacctcttttccagtgtaccatggacgccatgctgtatgtacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgtccat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6206706 |
tttacctcttttccagtgtaccatggacgccatgctgtatgcacaggcagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccat |
6206805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University