View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_low_9 (Length: 629)
Name: NF14289_low_9
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 220 - 613
Target Start/End: Complemental strand, 11369061 - 11368667
Alignment:
| Q |
220 |
aagaacatgtgaatacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaacttagctttggtgaggatgaaagttagcaatgaac |
319 |
Q |
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| T |
11369061 |
aagaacatgtgaatacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaacttagctttggtgaggatgaaagttagcaatgaac |
11368962 |
T |
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| Q |
320 |
ccgacgtccaatcatttatgatcattcataaagagagcgg-tcaaacaactaatttttaaaaactgaaataagaaatcttgcattgctaattttaaccta |
418 |
Q |
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| T |
11368961 |
ccgacgtccaatcatttatgatcattcataaagagggcggatcaaacaactaatttttaaaaactgaaataagaaatcttgcattgctaattttaaccta |
11368862 |
T |
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| Q |
419 |
catccaatcctttattatcattcacattgaacagggtagacaaaacaaaaacttaatcattgcaacttaccataataaacattgaacttggagaccaaag |
518 |
Q |
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| T |
11368861 |
catccaatcctttattatcattcacattgaacagggtagacaaaacaaaaacttaatcattgtaacttaccataataaacattgagcttggagaccaaag |
11368762 |
T |
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| Q |
519 |
ttatgaagaaattcacgtaatcttcaattctcatttgagtagctgtattaaaagaattcaacacttctatgatccgaaagagcatatcaggatct |
613 |
Q |
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| T |
11368761 |
ttatgaagaaattcacgtaatcttcaattctcatttgagtagctgtattaaaagaattcaacacttctatgatccgaaagagcatatcaggatct |
11368667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 62 - 284
Target Start/End: Complemental strand, 11369285 - 11369062
Alignment:
| Q |
62 |
taccctaaaggtaggtttaaagaataacattttt-aagacaaaatgatatcaaacatgattaattaaataatccaaaataactaagtcaaacttattata |
160 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11369285 |
taccctaaaggtaggtttaaagaataacatttttgaagacaaaatgatatcaaacatgattaattaaataatccaaaataactaagtcaaacttattata |
11369186 |
T |
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| Q |
161 |
tccagtgatataatgcctgcctagtaagtcaatcattcatcaaataagatagatagctcaagaacatgtgaatacgactatctaattttgttatccagtg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11369185 |
tccagtgatataatgcctgcctagtaagtcaatcattcatcaaataagatagatagctcaagaacatgtgaatacgactatctaattttgttatctagtg |
11369086 |
T |
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| Q |
261 |
gttaaaaagagtggcagactgaaa |
284 |
Q |
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|||| ||||||||||||||||||| |
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| T |
11369085 |
gttagaaagagtggcagactgaaa |
11369062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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