View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14290_high_1 (Length: 407)
Name: NF14290_high_1
Description: NF14290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14290_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 389
Target Start/End: Complemental strand, 4048729 - 4048346
Alignment:
| Q |
6 |
aggagcacagaagagcgataatggcaacactcgagaatttagttgagcatagcaaaagtctgcctagttctgttggaaacactacagcgccatctttttg |
105 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
4048729 |
aggaacacagaagagcgataatggcaacactcgagaatttagttgagcatagcaaaagtctgcctagttctgttggagacactacaacgccatctttttg |
4048630 |
T |
|
| Q |
106 |
tagatttttgttgagtatgactcatagtttattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagtttta |
205 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4048629 |
tagatttttgttgagtatgactcataatttattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagtttta |
4048530 |
T |
|
| Q |
206 |
taaatacaaaggtactgtagtcgctctacagtcggagaggtatgcacaatccactgaagtttgattcattttcttgacctgtatctgttttctttcgaac |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4048529 |
taaatacaaaggtactgtagtcgctctacagtcggagaggtatgcacaatccactgaagtttgattcattttcttgacctgtatttgttttctttcgaac |
4048430 |
T |
|
| Q |
306 |
cggagttactagtctaacaatttcaaatacattgaagtttgattccttttcttgacctgtaaagatgtcatgagttcaacaagt |
389 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4048429 |
cggagttactagtctaataatttcaaatacattgaagtttgattccttttcttgacctgtaaagatgtcatgagttcaacaagt |
4048346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 4151964 - 4152046
Alignment:
| Q |
121 |
tatgactcatagtttattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagttt |
203 |
Q |
| |
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|||||||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||| |||||| || ||| | ||||||| |
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|
| T |
4151964 |
tatgactcatggtttaatgataagtgcgcaggtggctcgagttgagccgctctgataaactgtactttgtaaaacttaagttt |
4152046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 13939561 - 13939944
Alignment:
| Q |
6 |
aggagcacagaagagcgataatggcaacactcgagaatttagttgagcatagcaaaagtctgcctagttctgttggaaacactacagcgccatctttttg |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
13939561 |
aggaacacagaagagcgataatggcaacacttgacaatttagttgagcatagcaaaagtctgcctagttctgttggagacactacagtgccatctttttg |
13939660 |
T |
|
| Q |
106 |
tagatttttgttgagtatgactcatagtttattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagtttta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
13939661 |
tagatttttgttgagtatgactcatagtttattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctacaaaccctaagtttta |
13939760 |
T |
|
| Q |
206 |
taaatacaaaggtactgtagtcgctctacagtcggagaggtatgcacaatccactgaagtttgattcattttcttgacctgtatctgttttctttcgaac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13939761 |
taaatacaaaggtactgtagtcgctctacagtcggagaggtatgcacaatccactgaagtttgattcattttcttgacctgtatctgttttctttcgaac |
13939860 |
T |
|
| Q |
306 |
cggagttactagtctaacaatttcaaatacattgaagtttgattccttttcttgacctgtaaagatgtcatgagttcaacaagt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
13939861 |
cggagttactagtctaacaatttcaaatacattgaagtttgattccttttcttgacctgtaaagatgtcacgagttcaacaagt |
13939944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 38779407 - 38779439
Alignment:
| Q |
121 |
tatgactcatagtttattgataagtgggcaagt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
38779407 |
tatgactcatagtttattgataagtgggcaagt |
38779439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 38270188 - 38270137
Alignment:
| Q |
109 |
atttttgttgagtatgactcatagtttattgataagtgggcaagtcgctcga |
160 |
Q |
| |
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|||| ||| ||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
38270188 |
atttctgtagagtatgactcatagtttactgataattgggcaggtcgctcga |
38270137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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