View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14290_high_2 (Length: 250)
Name: NF14290_high_2
Description: NF14290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14290_high_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 41620062 - 41619815
Alignment:
| Q |
5 |
tgtcgaagaatattactattgttttgagatcccttttcgttcacaaaaggttataaaataatgaaaatttggcaaacnnnnnnnn--ttcttatgattgg |
102 |
Q |
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| T |
41620062 |
tgtcgaacaatattactattgttttgagatcccttttctttcacaaaaggttataaaataatgaaaatttggcaaacaaaaaaagaattcttatgattgg |
41619963 |
T |
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| Q |
103 |
taggatttttatgtgatctctttactaagtgtgatgaagtgacaaatacaacatattgatgtacctaagagacatttagtaattattaacattattattc |
202 |
Q |
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| T |
41619962 |
taggatttttatgtgatctctttactaagtgtgataaagggacaaatacaacatattgatgtacctaagagatatttagtaattattaacattattattc |
41619863 |
T |
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| Q |
203 |
ttgttttatcgttttccttttgtttatttggcatgtataatttcatat |
250 |
Q |
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| T |
41619862 |
ttgttttatcgttttccctatgtttatttggcaagtataatttcatat |
41619815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 41615270 - 41615221
Alignment:
| Q |
167 |
ctaagagacatttagtaattattaacattattattcttgttttatcgtttt |
217 |
Q |
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| T |
41615270 |
ctaagagatatttagtaattat-aacattattattattgttttatcgtttt |
41615221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 24289124 - 24289176
Alignment:
| Q |
157 |
attgatgtacctaagagacatttagtaattattaacattattattcttgtttt |
209 |
Q |
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| T |
24289124 |
attgatgtacctaagagacagttaatatttattaacagtattattcttgtttt |
24289176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 17358846 - 17358777
Alignment:
| Q |
122 |
ctttactaagtgtgatgaagtgacaaatacaacatattgatgtacctaagagacatttagtaattattaa |
191 |
Q |
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| T |
17358846 |
ctttactatgtgtgctaaagagacagatacaacatagtgatttacttaagagacatttggtaatgattaa |
17358777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 3067119 - 3067213
Alignment:
| Q |
90 |
ttcttatgattggtaggatttttatgtgatctctttactaagtgtgatgaagtgacaaatacaacatattgatgtacctaagagacatttagtaat |
185 |
Q |
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| T |
3067119 |
ttcttatgattgttaagttttttatgtgccctctt-actaagtgtgttaaagggacaaaaataacacaatgatgtacttaagagacatttaataat |
3067213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 25409774 - 25409835
Alignment:
| Q |
124 |
ttactaagtgtgatgaagtgacaaatacaacatattgatgtacctaagagacatttagtaat |
185 |
Q |
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| T |
25409774 |
ttactaattgtgttaaagagacaaatacaacccattgatgtacttaagagacatttaataat |
25409835 |
T |
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