View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14291_high_3 (Length: 344)
Name: NF14291_high_3
Description: NF14291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14291_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 38196855 - 38197183
Alignment:
| Q |
1 |
tgacagaaaggttattctcttttactcttgttttgcccattagcattacaatgtaatcaaaggctgatgcaggtgtatatagcggaaaatagagctagta |
100 |
Q |
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| T |
38196855 |
tgacagaaaggtttttctcttttactcttgttttgcccattagcattacaatgtaatcaaaggctgatgcaggtgtatatagcggaaaatagagctagta |
38196954 |
T |
|
| Q |
101 |
ttacaccatatgaacatgcaaagcacatgaattgatttacttttagaattttccgagtgataaagcaaagaaataaaacattttacttctatcaataaac |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38196955 |
ttacacggtatgaacatgcaaagcacatgaattgatttacttttagaattgtccgagtgataaagcaaagaaataaaacattttacttctattaataaac |
38197054 |
T |
|
| Q |
201 |
aatatttcaaagaaatttccttggcaatgcaccttcctcattatcgtagcctgcaaattcatgcttttcattcaacatcaggcagaagatatctttacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38197055 |
aatatttcaaagaaatttccttggcaatgcaccttcctcattatcttagcctgcaaattcatgcttttcattcaacatcaggcagaagatatctttacta |
38197154 |
T |
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| Q |
301 |
gagaagaaaaatatagcgaggatggaaat |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38197155 |
gagaagaaaaatatagcgaggatggaaat |
38197183 |
T |
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