View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14291_low_14 (Length: 202)
Name: NF14291_low_14
Description: NF14291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14291_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 3947472 - 3947302
Alignment:
| Q |
16 |
atgaaggagcaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaac |
115 |
Q |
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| T |
3947472 |
atgaaggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaac |
3947373 |
T |
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| Q |
116 |
ctgaaaacaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcagaagctgtaactatt |
186 |
Q |
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| T |
3947372 |
ctgaaaacaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcagaagctgtaactatt |
3947302 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18602729 - 18602683
Alignment:
| Q |
20 |
aggagcaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtt |
66 |
Q |
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| T |
18602729 |
aggaacaaaaggtgactgttaaaggaaatgtaaacccacaagatgtt |
18602683 |
T |
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