View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14291_low_3 (Length: 463)
Name: NF14291_low_3
Description: NF14291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14291_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 25 - 447
Target Start/End: Original strand, 51741263 - 51741685
Alignment:
| Q |
25 |
gtggagtacaatatgatgaaaaagaaattttaatgtctttatcaggggaagagactgtgaatgagattgacaatacttttatggttgatttttataacag |
124 |
Q |
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| T |
51741263 |
gtggagtacaatatgatgaaaaagaaattttaatgtctttatcaggggaagagactgtgaatgagattgacaatacttttatggttgatttttataacag |
51741362 |
T |
|
| Q |
125 |
gtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaagagattggggacttgtactctttg |
224 |
Q |
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| T |
51741363 |
gtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaagagattggggacttgtactctttg |
51741462 |
T |
|
| Q |
225 |
tttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaacttggaacggttggtgatgtcttgg |
324 |
Q |
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| T |
51741463 |
tttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaacttggaacggttggtgatgtcttgg |
51741562 |
T |
|
| Q |
325 |
cttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaagggcataattcatgattaattagtattccaagtaca |
424 |
Q |
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| T |
51741563 |
cttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaagggcataattcatgattaattagtattccaagtaca |
51741662 |
T |
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| Q |
425 |
atagtattatacttcttatatgt |
447 |
Q |
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| T |
51741663 |
atagtattatacttcttatatgt |
51741685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 407
Target Start/End: Original strand, 10202061 - 10202446
Alignment:
| Q |
25 |
gtggagtacaatatgatgaaaaagaaattttaatgtctttatcaggggaagagactgtgaatga---gattgacaatacttttatggttgatttttataa |
121 |
Q |
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| T |
10202061 |
gtggagtacaatctaaggaaaaagagattttaatgtcgttgtccggggaagagactgcgaatgatgagattgacaataacttcatggttgatttttataa |
10202160 |
T |
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| Q |
122 |
caggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaagagattggggacttgtactct |
221 |
Q |
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|||| |||| ||||| ||| | ||||||||||| ||||| |||||||| |||||| ||||||||| |||| ||||||||||||||| ||| | |||||| |
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| T |
10202161 |
caggcatgtcgcttcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaaagagattggtgacatatactct |
10202260 |
T |
|
| Q |
222 |
ttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaacttggaacggttggtgatgtct |
321 |
Q |
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| T |
10202261 |
ttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttggatcagttggtgatattt |
10202360 |
T |
|
| Q |
322 |
tggcttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaagggcataattcatgattaa |
407 |
Q |
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| T |
10202361 |
tagcttcttcagattttgatattcatggttctgtgttggtcattcaacaacatagagatgtcaagaaaggtctaatacatgattaa |
10202446 |
T |
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