View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14291_low_4 (Length: 381)
Name: NF14291_low_4
Description: NF14291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14291_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 1900944 - 1901105
Alignment:
| Q |
21 |
tttgtctatctatctaaaaatatgaaggaaaatggtaaacgtgtaactaacctccagaacttctgagaaaggtcacggtttttccctgttcatcatcatc |
120 |
Q |
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| T |
1900944 |
tttgtctatctatctaaaaatatgaaggaaaatggtaaacgtgtaactaacctccagaacttctgagaaaggtcacggtttttccctgttcatcatcatc |
1901043 |
T |
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| Q |
121 |
acaatcaaaaacaattagcgcatgaatcaataaatcaaagccaaacaaagaacgagtggatc |
182 |
Q |
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| T |
1901044 |
acaatcaaaaacaattagcgcatgaatcaataaatcaaagccaaacaaagaacgagtggatc |
1901105 |
T |
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Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 1901153 - 1901277
Alignment:
| Q |
230 |
ggggtttttggtttttagggtttagagagagtgctcaccgtatccggtgcagtggacagtaacgttttgaccaggagttggcttaggaccgtttccaggt |
329 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1901153 |
ggggtttttggtttttagggtttagagagagtgcgcaccgtatccggtgcagtggacagtaacgttttgaccaggagttggcttaggaccgtttccaggt |
1901252 |
T |
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| Q |
330 |
cgaacgatttgcttctcaactccca |
354 |
Q |
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| T |
1901253 |
cgaacgatttgcttctcaactccca |
1901277 |
T |
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