View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14291_low_5 (Length: 372)
Name: NF14291_low_5
Description: NF14291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14291_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 216 - 356
Target Start/End: Complemental strand, 32823148 - 32823008
Alignment:
| Q |
216 |
gtgaattaatgttgttttgaacggttgttggaaaccaccaacgtatcataatcatcagcaaaggaagattgaagtgcggcgtagattctattccagaact |
315 |
Q |
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| T |
32823148 |
gtgaattaatgttgtcttgaaaggttgttggaaaccaccaacgtatcataatcatcagcaaaggaagattgaagtgcggcgtagattctattccagaatt |
32823049 |
T |
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| Q |
316 |
tgcactgctcggggacattcacaaacctcgtagcttccatc |
356 |
Q |
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| T |
32823048 |
tgcactgctcggggacattcacaaacctcgtagcttccatc |
32823008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 32823329 - 32823174
Alignment:
| Q |
44 |
ataataataagtcaaaaagtgtact-attcaaacacaatgtagatgtgaaattgagctttttattgaaaaatcaatagtatacaactgtaaactacgaag |
142 |
Q |
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| T |
32823329 |
ataataatcagtcaaaaagtgtactcattcaaacacaatgtagatgtgaaattgagctttttattgaaaaatcaatagtatacaa-tgtaaactgcgaag |
32823231 |
T |
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| Q |
143 |
caatcgtcataactatctgtatgagtatgacctaagatgaaatcagtgcctaattac |
199 |
Q |
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| T |
32823230 |
caatcgtcataactatctgtatgagtatgacctaagtagaaatcagtgcctaattac |
32823174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 52722551 - 52722466
Alignment:
| Q |
44 |
ataataataagtcaaaaagtgtact-attcaaacacaatgtagatgtgaaattgagctttttattgaaaaatcaatagtatacaac |
128 |
Q |
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| T |
52722551 |
ataataatcaggcaaaaagtgtagtcattcaaacacaatgtagacaggaaattgaactttttattgaaaaatcaacaatatacaac |
52722466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 52721800 - 52721708
Alignment:
| Q |
252 |
accaacgtatcataatcatcagcaaaggaagattgaagtgcggcgtagattctattccagaacttgcactgctcggggacattcacaaacctc |
344 |
Q |
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||||| |||||||| ||||||||||| | ||||||||| |||| ||||||| | |||||||| ||| ||||| | |||||||||||||||| |
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| T |
52721800 |
accaatgtatcatactcatcagcaaaagcagattgaagcgcggtgtagattgttttccagaatttgagctgctgagagacattcacaaacctc |
52721708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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