View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14292_low_2 (Length: 304)
Name: NF14292_low_2
Description: NF14292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14292_low_2 |
 | |
|
| [»] chr3 (19 HSPs) |
| |
|
| [»] scaffold1643 (1 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 6946106 - 6945806
Alignment:
| Q |
4 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtacta |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6946106 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttagtatctcttaaactgaaggactgtgtacta |
6946007 |
T |
|
| Q |
104 |
tgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaaca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6946006 |
tgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtaacggaataaagatcatcggcgaagagttttacaaca |
6945907 |
T |
|
| Q |
204 |
atagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgggtttgtcttgaagggtttcctttgct |
303 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
6945906 |
atagtacaacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggttttgtcctgaaaggtttcctttgct |
6945807 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
6945806 |
t |
6945806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 304
Target Start/End: Original strand, 6795863 - 6796109
Alignment:
| Q |
58 |
tcatttatcaaacttggtatctcttaatctgaaggactgtgtactatgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatt |
157 |
Q |
| |
|
||||||||| ||||| ||||||||| | ||| | |||| || | |||||||| |||| ||| || |||||| |||||||||||||||| |||| ||| |
|
|
| T |
6795863 |
tcatttatccaacttagtatctcttcaactgcaagactatggattatgttccgatttgccagcactagggcagctcccctctctcaaggacctttccatt |
6795962 |
T |
|
| Q |
158 |
tcaaactgtgacggaataaagatcatcggagaagagttttacaacaatagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggata |
257 |
Q |
| |
|
|||| ||||||||||||| |||||| || ||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
6795963 |
tcaagatgtgacggaataatgatcattggtgaagaattttacaacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggaga |
6796062 |
T |
|
| Q |
258 |
tggtcaattgggaggaatgggtttgtcttgaagggtttcctttgctt |
304 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6796063 |
tggacaattgggaggaatggttttgtcttgaagggtttcctttgctt |
6796109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 8453473 - 8453170
Alignment:
| Q |
1 |
gaggctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgta |
100 |
Q |
| |
|
|||||| |||||| || | ||||| || | |||||||||||||||| |||| |||| ||||||| ||||||| |||||||||||||| || |||| | |
|
|
| T |
8453473 |
gaggcttaccatctcaaaatacaaaggtaatagctttccaaattggataaggggttatcatttaccaaacttagtatctcttaatctacagttttgtgga |
8453374 |
T |
|
| Q |
101 |
ctatgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttaca |
200 |
Q |
| |
|
||||||| || ||| |||||| |||||| ||||||| | ||||||||||| ||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
8453373 |
ttatgttctttgttgccaccacttgggacactcccctttctcaagatgctttctatttcagactgtgatggaataaagatcataggtgaagagttttacg |
8453274 |
T |
|
| Q |
201 |
acaatagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgggtttgtcttgaagggtttccttt |
300 |
Q |
| |
|
||| |||| || |||||| | ||||||||| ||||||||||||||||| ||| | ||| |||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
8453273 |
acagtagttcaataaatgtgctgttcaggtctcttgaagttttgaaatttgagaagatgaacaattgggaggaatggttgtgtcttgaagggtttccttt |
8453174 |
T |
|
| Q |
301 |
gctt |
304 |
Q |
| |
|
|||| |
|
|
| T |
8453173 |
gctt |
8453170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8570146 - 8570449
Alignment:
| Q |
1 |
gaggctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| | ||||| ||||||||||| || | | ||| | |
|
|
| T |
8570146 |
gaggctcaccatcacatactacaatggcagtagctttccaaattggttaatgggttttcttttacccaacttagtatctcttaaactacaccagtgtaga |
8570245 |
T |
|
| Q |
101 |
ctatgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttaca |
200 |
Q |
| |
|
|||||||| || || ||||||||| |||||| |||||||||| ||||||||||| | ||| | || ||| | ||||| || ||||||||||| |
|
|
| T |
8570246 |
ttatgttccatgttgccgccacttgggcagctcccctatctcaaggagctttctatttcatattgttatggtatagaaatcattggcaaagagttttacg |
8570345 |
T |
|
| Q |
201 |
acaatagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgggtttgtcttgaagggtttccttt |
300 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||| |||| | ||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
8570346 |
gcaatagttcaacaattattccgttcaggtcccttgaagttttggaatttgcatggatgaacaattgggaggaatggttttgtattgaagggtttccttt |
8570445 |
T |
|
| Q |
301 |
gctt |
304 |
Q |
| |
|
|||| |
|
|
| T |
8570446 |
gctt |
8570449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 6555645 - 6555918
Alignment:
| Q |
4 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtacta |
103 |
Q |
| |
|
||||| ||| ||| ||||||| || ||||| ||||||||||||||||| |||| ||||||| | ||||| ||||||||| | || |||| ||| || |
|
|
| T |
6555645 |
gctcaacattacacactacaaaggtagtagatttccaaattggctaaggggttgtcatttacccaacttagtatctcttgaacttaagggttgtaagtta |
6555744 |
T |
|
| Q |
104 |
tgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaaca |
203 |
Q |
| |
|
|||||| ||| |||| ||||| || |||| ||||||||| | |||| |||| ||||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
6555745 |
tgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatggca |
6555844 |
T |
|
| Q |
204 |
atagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgg |
277 |
Q |
| |
|
||| | ||||| |||||| |||| |||||||||| ||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
6555845 |
ataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatgg |
6555918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 304
Target Start/End: Complemental strand, 8470367 - 8470095
Alignment:
| Q |
32 |
agctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtactatgttcccatttaccaatgcttgggcagt |
131 |
Q |
| |
|
||||||||||| ||| |||| |||| ||||||| ||||||| ||||||||||| | || ||||| | |||| |||||| ||| ||||| ||| |
|
|
| T |
8470367 |
agctttccaaagtggataaggggttgtcatttaccaaacttagtatctcttaaattacagagctgtggatcatgtctccatttgccaccacttggacagc |
8470268 |
T |
|
| Q |
132 |
tcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaacaatagtataacaaatgttccgttcaggtc |
231 |
Q |
| |
|
|||| | |||||||||| || |||| | ||||| | ||||||||||| || || ||||||||| | ||| | | |||||||||||||||| ||| |
|
|
| T |
8470267 |
tcccgtgtctcaaggagcttgctatctgtgactgtcatggaataaagataattggtgaagagtttcatggcaacaattcaacaaatgttccgttcttgtc |
8470168 |
T |
|
| Q |
232 |
ccttgaagttttgaaattggaggatatggtcaattgggaggaatgggtttgtcttgaagggtttcctttgctt |
304 |
Q |
| |
|
|||||||||||||||||| | | | ||| || ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
8470167 |
ccttgaagttttgaaatttgtgaagatgaacagttgggaggaatggttgtgtcttgaagggtttcctttgctt |
8470095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 6734782 - 6734512
Alignment:
| Q |
4 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtacta |
103 |
Q |
| |
|
||||| ||||||| ||||||| || ||||| ||||||||||||||||| ||| ||||||| ||||| ||||||||| | ||||| | ||| | |
|
|
| T |
6734782 |
gctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacgcaacttagtatctcttgaactgaatggttgtaga--- |
6734686 |
T |
|
| Q |
104 |
tgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaaca |
203 |
Q |
| |
|
|||||| ||| ||||| ||||| || |||| ||||||||| | |||| |||| ||||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
6734685 |
tgttcctgtttgccaatacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatggca |
6734586 |
T |
|
| Q |
204 |
atagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgg |
277 |
Q |
| |
|
||| | ||||| |||||| |||| |||||||||| ||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
6734585 |
ataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatgg |
6734512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 304
Target Start/End: Original strand, 6840248 - 6840390
Alignment:
| Q |
162 |
actgtgacggaataaagatcatcggagaagagttttacaacaatagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggt |
261 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||| |||| | |||| |||||| || ||||| ||||||||||||||||| ||| | ||| |
|
|
| T |
6840248 |
actgtgatgaaataaagatcatcgatcaagagttttacgacaacgattcgacaattgttccatttaggtcgcttgaagttttgaaatttgagaagatgaa |
6840347 |
T |
|
| Q |
262 |
caattgggaggaatgggtttgtcttgaagggtttcctttgctt |
304 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6840348 |
caattgggagaaatggttttgtcttgaagggtttcctttgctt |
6840390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 6481211 - 6481371
Alignment:
| Q |
35 |
tttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtactatgttcccatttaccaatgcttgggcagttcc |
134 |
Q |
| |
|
|||||||||||| |||| |||| ||||||| | ||||| ||||||||| | || |||||| | ||||||| ||||| ||| |||||||| ||| |
|
|
| T |
6481211 |
tttccaaattggataaggggttgtcatttacccaacttagtatctcttcaaatgcgtcactgtggattatgttctcatttgccaccacttgggcaactcc |
6481310 |
T |
|
| Q |
135 |
cctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagtt |
195 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
6481311 |
cctctctcagggagctttctatttcaaactgtaaaagaataaagatcatcggtgaagagtt |
6481371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 5279379 - 5279303
Alignment:
| Q |
122 |
cttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagtttta |
198 |
Q |
| |
|
||||||||| | |||||||| |||||| ||||||||||| | ||||| |||||| |||| ||||| ||||||||||| |
|
|
| T |
5279379 |
cttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagtttta |
5279303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 6528079 - 6528157
Alignment:
| Q |
4 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctctt |
82 |
Q |
| |
|
||||| ||||||| ||||||| || ||||| ||||||||||||||||| ||| ||||||| | ||||| ||||||||| |
|
|
| T |
6528079 |
gctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
6528157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 6521339 - 6521606
Alignment:
| Q |
4 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtacta |
103 |
Q |
| |
|
||||| ||||||| |||||| || ||||| ||||||||||||| ||| || ||||||| | ||||| ||||||||| | |||||||| ||| | |
|
|
| T |
6521339 |
gctcaacatcacacgctacaaaggtagtagatttccaaattggc---gtgattgtcatttacccaacttagtatctcttcaactgaaggattgtaga--- |
6521432 |
T |
|
| Q |
104 |
tgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaaca |
203 |
Q |
| |
|
|||||| ||| |||| ||||| || |||| ||||||||| | |||| |||| ||||||| |||||||||||||| | ||||| ||||| || |
|
|
| T |
6521433 |
tgttcctgtttgccaacacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagatttttatggca |
6521532 |
T |
|
| Q |
204 |
atagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgg |
277 |
Q |
| |
|
||| | ||||| |||||| |||| ||||||| || ||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
6521533 |
ataattcaacaattgttccattcaagtcccttcaatatttgagatttcaggatatggtcaactgggaggaatgg |
6521606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 6932260 - 6932130
Alignment:
| Q |
172 |
aataaagatcatcggagaagagttttacaacaatagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggag |
271 |
Q |
| |
|
||||||||||||| | ||||| |||||| |||||| ||||||| | |||| || ||||||||||||||||||| ||| || | ||| || |||| |
|
|
| T |
6932260 |
aataaagatcatcagtgaagaattttacgacaata--ataacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggag |
6932163 |
T |
|
| Q |
272 |
gaatgggtttgtcttgaagggtttcctttgctt |
304 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||| |
|
|
| T |
6932162 |
gaatggttatgtcttgatgggtttcctttgctt |
6932130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 6781093 - 6781151
Alignment:
| Q |
219 |
ttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgg |
277 |
Q |
| |
|
|||| |||| |||||||||| ||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
6781093 |
ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatgg |
6781151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 6486361 - 6486434
Alignment:
| Q |
172 |
aataaagatcatcggagaagagttttacaacaatagtataacaaatgttccgttcaggtcccttgaagttttga |
245 |
Q |
| |
|
||||||||||||| | ||||| |||||| |||||| | ||||| | |||| || ||||||||||||||||||| |
|
|
| T |
6486361 |
aataaagatcatcagtgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttga |
6486434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 6592662 - 6592723
Alignment:
| Q |
122 |
cttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcat |
183 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||||| |||||| |||||| ||||||| |
|
|
| T |
6592662 |
cttgggcagttcccctctctcaagaagctttccttttcaggctgtgatggaatagagatcat |
6592723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 6915821 - 6915768
Alignment:
| Q |
122 |
cttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaata |
175 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||| |||||| |||||| |
|
|
| T |
6915821 |
cttgggcagttcccctctctcaagaagctttttatttcaggctgtgatggaata |
6915768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 5262491 - 5262427
Alignment:
| Q |
134 |
ccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagtttta |
198 |
Q |
| |
|
|||||||| || ||| ||||||||||| | ||| | |||||| |||||||||| ||||||||||| |
|
|
| T |
5262491 |
ccctctcttaaagagctttctatttcagaatgttatggaatagagatcatcggtgaagagtttta |
5262427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6840113 - 6840177
Alignment:
| Q |
18 |
actacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctctt |
82 |
Q |
| |
|
||||||| || | ||||||||||| ||||||||| | || ||||||||| ||||| ||||||||| |
|
|
| T |
6840113 |
actacaaaggtaatagctttccaagttggctaagggcttgtcatttatccaacttagtatctctt |
6840177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 993 - 708
Alignment:
| Q |
19 |
ctacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtactatgttcccatttacca |
118 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| |||| ||||||| | ||||| ||||||||| | ||| ||||| | ||||||||||||| ||| |
|
|
| T |
993 |
ctacaatggcagcaactttccaaattggataacaggttgtcatttacccaacttagtatctcttcaactgttaagctgtggattatgttcccattttcca |
894 |
T |
|
| Q |
119 |
atgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaacaatagtataacaaatg |
218 |
Q |
| |
|
||||||||| | || ||||||||| | ||||||||||| | ||||| |||||||||||||| || |||||| || | || | | |||| ||| |
|
|
| T |
893 |
ccacttgggcagcttccttctctcaagaatctttctatttcatattgtgatggaataaagatcattggtgaagagattcatggcagcaatttaacgcatg |
794 |
T |
|
| Q |
219 |
ttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgggtttgtcttgaagggtttcctttgctt |
304 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | || |||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
793 |
ttccgttcttgtcccttgaagttttgaaatttgagaagttgaacaattgggaggaatggttgtgtcctgaagggtttcctttgctt |
708 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 6574517 - 6574819
Alignment:
| Q |
1 |
gaggctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||| | ||||| |||||||||| ||| || | |||| | |
|
|
| T |
6574517 |
gaggctcaccatcaaatactacaatggcagcagctttccaaattggctaaggtgttctcatttacctaacttagtatctcttatcctgcagaattgtgga |
6574616 |
T |
|
| Q |
101 |
ctatgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttaca |
200 |
Q |
| |
|
| ||||||| || || ||||| ||| |||| | |||||||||| ||| |||||| ||| | ||||||||||||||||| |||||||| ||| |
|
|
| T |
6574617 |
ttttgttccctgtttccgccacttggacagctcccatgtctcaaggagcttttcatttcaggttgtaatggaataaagatcatcggtgaagagttctacg |
6574716 |
T |
|
| Q |
201 |
acaatagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgggtttgtcttgaagggtttccttt |
300 |
Q |
| |
|
| || || |||| ||||||||||||||||||||| ||||| |||| | | ||||| | | ||| |||||||| ||| |||||| ||||||| || |
|
|
| T |
6574717 |
gcgattgttcaacattagttccgttcaggtcccttgaatttttggaatttgggaatatgcccgaatggaaggaatggttttaacttgaacggtttccctt |
6574816 |
T |
|
| Q |
301 |
gct |
303 |
Q |
| |
|
||| |
|
|
| T |
6574817 |
gct |
6574819 |
T |
|
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Target: scaffold0425 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 8693 - 8966
Alignment:
| Q |
4 |
gctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaacttggtatctcttaatctgaaggactgtgtacta |
103 |
Q |
| |
|
||||| |||||||| |||||| || ||||||||||||||||||||||| ||| ||||||| | ||||| ||||||||| | ||||||| |||| || |
|
|
| T |
8693 |
gctcaacatcacatgctacaaaggtagtagctttccaaattggctaaggggtagtcatttaccgaacttagtatctcttcaactgaagggttgtgggtta |
8792 |
T |
|
| Q |
104 |
tgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtgacggaataaagatcatcggagaagagttttacaaca |
203 |
Q |
| |
|
|||||| ||| ||| ||||| || |||| ||||||||| | |||| |||| ||||||| |||||||||||||| | ||||| ||||| || |
|
|
| T |
8793 |
tgttcctgtttgccagcacttggacaactcccttctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagaattttatggca |
8892 |
T |
|
| Q |
204 |
atagtataacaaatgttccgttcaggtcccttgaagttttgaaattggaggatatggtcaattgggaggaatgg |
277 |
Q |
| |
|
||| | ||||| |||||| |||| |||||||||| ||||| ||| | |||||||||||| |||||||||||| |
|
|
| T |
8893 |
ataattcaacaattgttccattcaagtcccttgaatatttgagatttgtggatatggtcaactgggaggaatgg |
8966 |
T |
|
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