View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14293_high_3 (Length: 325)
Name: NF14293_high_3
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14293_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 22622637 - 22622325
Alignment:
| Q |
1 |
acggcatacagtgtggttcaaaagtgcacggcatacggtgtggttcaatttttaacaattcataatttccaaaggtattgacatgcaattgactgaattc |
100 |
Q |
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| T |
22622637 |
acggcatacagtgtggttcaaaagtgcacggcatacggtgtggttcaattgttaactattcataatttccaaaggtattgacatgcaattgactgaattc |
22622538 |
T |
|
| Q |
101 |
aaaagctctaggatttaagtatccattgtcacagcggatgttaaatccattagcttgcttgggtcttgcatcatgactgaatgcatttggacagtgaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22622537 |
aaaagctctaggatttaagtatccattgtcacagcggatgttaaatccattagcttgcttgggtcttgcatcatgaccgaatgcatttggacagtgaagt |
22622438 |
T |
|
| Q |
201 |
tgctgaggagtacattggaggaactaggttaaatatttgtgagagatatttatgaagcagtctaagttggatgattgttgagctgagtttgctctatgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22622437 |
tgctgaggagtacattggaggaactaggttaaatatttgtgagagatatttatgaagcagtctaagttagatgattgttgagctgagtttgctctatgtc |
22622338 |
T |
|
| Q |
301 |
tgtgcctttgctt |
313 |
Q |
| |
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||| ||||||||| |
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| T |
22622337 |
tgttcctttgctt |
22622325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 15146858 - 15146968
Alignment:
| Q |
23 |
agtgcacggcatacggtgtggttcaatttttaacaattcataatttccaaaggtattgacatgcaattgactgaattcaaaagctctaggatttaagtat |
122 |
Q |
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|||||| |||||||| |||| |||| || ||||||||| |||||||||||||||||| |||| ||||||||||||| |||| || || ||| |||||| |
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| T |
15146858 |
agtgcatggcatacgctgtgcttcagttgctaacaattcgtaatttccaaaggtattggcatggaattgactgaattaaaaaactgtacaattcaagtat |
15146957 |
T |
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| Q |
123 |
ccattgtcaca |
133 |
Q |
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||||||||||| |
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| T |
15146958 |
ccattgtcaca |
15146968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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