View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14293_low_10 (Length: 225)
Name: NF14293_low_10
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14293_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1099872 - 1100084
Alignment:
| Q |
1 |
taataatatgcaagtcaaatgtacattctagataacccctnnnnnnntaagatttgtcaatttcatactccatccgtcctaaatttaagcagnnnnnnnc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1099872 |
taataatatgcaagtcaaatgtacattctaggtaacccctaaaaaaataagatttgtcaatttcatactccatccgtcctaaatttaagcagtttttttc |
1099971 |
T |
|
| Q |
101 |
tttacaatatcaagaaacatttattacttgttcaattatatcattaatcatttataacactattaannnnnnngtcnnnnnnngacactattaatttaat |
200 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
1099972 |
tttacaatatcaagaaacatttattactttttcaattatatcattaatcatttataacactattaatttttttgtcaaaaaaagacactattaatttaat |
1100071 |
T |
|
| Q |
201 |
tctttaatatata |
213 |
Q |
| |
|
|||||||| |||| |
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|
| T |
1100072 |
tctttaatttata |
1100084 |
T |
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