View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14293_low_11 (Length: 223)

Name: NF14293_low_11
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14293_low_11
NF14293_low_11
[»] chr6 (36 HSPs)
chr6 (2-223)||(5398241-5398459)
chr6 (1-216)||(5439213-5439437)
chr6 (127-223)||(5156017-5156113)
chr6 (127-223)||(5372292-5372388)
chr6 (123-221)||(5177936-5178034)
chr6 (123-221)||(5279761-5279859)
chr6 (123-221)||(5688903-5689001)
chr6 (123-223)||(2939110-2939210)
chr6 (2-223)||(5180644-5180874)
chr6 (2-82)||(5100730-5100810)
chr6 (2-82)||(5135831-5135911)
chr6 (1-105)||(5352699-5352803)
chr6 (123-221)||(5242512-5242610)
chr6 (123-220)||(23127310-23127407)
chr6 (123-218)||(5346229-5346324)
chr6 (2-223)||(5255984-5256214)
chr6 (123-223)||(5098406-5098506)
chr6 (123-220)||(5351598-5351695)
chr6 (127-223)||(5100822-5100918)
chr6 (127-223)||(5135923-5136019)
chr6 (16-82)||(5351703-5351769)
chr6 (123-221)||(5427097-5427195)
chr6 (146-223)||(5334380-5334457)
chr6 (18-125)||(5155866-5155973)
chr6 (14-220)||(5448807-5449022)
chr6 (123-221)||(5126629-5126727)
chr6 (12-113)||(5242360-5242459)
chr6 (123-223)||(5283224-5283324)
chr6 (133-220)||(5072692-5072779)
chr6 (123-221)||(5065449-5065547)
chr6 (123-221)||(5352863-5352961)
chr6 (127-182)||(2657155-2657210)
chr6 (123-220)||(5124443-5124540)
chr6 (124-213)||(5253738-5253827)
chr6 (17-62)||(5334453-5334498)
chr6 (2-46)||(5283109-5283153)
[»] chr3 (8 HSPs)
chr3 (123-221)||(47985393-47985491)
chr3 (123-221)||(48003967-48004065)
chr3 (123-221)||(47994680-47994778)
chr3 (123-221)||(48013252-48013350)
chr3 (2-70)||(47985230-47985298)
chr3 (2-70)||(47994517-47994585)
chr3 (2-70)||(48003804-48003872)
chr3 (2-70)||(48013089-48013157)
[»] chr7 (1 HSPs)
chr7 (144-220)||(36212942-36213018)
[»] chr4 (4 HSPs)
chr4 (168-221)||(25569037-25569090)
chr4 (123-218)||(4122644-4122739)
chr4 (123-221)||(4132618-4132713)
chr4 (123-167)||(7884155-7884199)
[»] scaffold1476 (1 HSPs)
scaffold1476 (154-217)||(43-106)
[»] chr2 (1 HSPs)
chr2 (154-217)||(22583333-22583396)
[»] scaffold0294 (1 HSPs)
scaffold0294 (124-220)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 5398459 - 5398241
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 101  Q
    ||||||||| |||  ||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||     
T  5398459 ttcattcaactcggcttttcttctttcttttctgattgaagtcatcagtgggctcatcttcagtagagaatctcttgacagggcgttcattttcatcat- 5398361  T
Q  102 actacaagtaattgtattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttacca 201  Q
      |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||||||||||||    
T  5398360 --tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttacca 5398263  T
Q  202 ggttctatacttgatactaccc 223  Q
    ||||||||||||||||||||||    
T  5398262 ggttctatacttgatactaccc 5398241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 5439437 - 5439213
Alignment:
Q  1 tttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcat 100  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||  |||||||||| |||||||||     
T  5439437 tttcattccattcgatttttcttctttctgttccgattgaagtcatcagtgggctcctctccagtagagaatctcttagcagggcgttcattttcatcac 5439338  T
Q  101 cactacaagtaattgtattcaa---------atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccac 191  Q
      |||| || ||  | ||||||         ||||||||| |||||| ||| |||||| ||  |||||||||||||||  |||||||||  |||||||||    
T  5439337 atctactagcaacggcattcaaattttgtgcatcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccac 5439238  T
Q  192 tttgttaccaggttctatacttgat 216  Q
    |||||||||||||||||||||||||    
T  5439237 tttgttaccaggttctatacttgat 5439213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 5156017 - 5156113
Alignment:
Q  127 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 223  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  5156017 tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccc 5156113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 5372388 - 5372292
Alignment:
Q  127 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 223  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  5372388 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccc 5372292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 5178034 - 5177936
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||    
T  5178034 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactac 5177936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 5279859 - 5279761
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||    
T  5279859 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactac 5279761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 5688903 - 5689001
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||    
T  5688903 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 5689001  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 2939210 - 2939110
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 222  Q
    ||||||||| ||||||| ||||| ||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||    
T  2939210 atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc 2939111  T
Q  223 c 223  Q
    |    
T  2939110 c 2939110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 5180644 - 5180874
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 101  Q
    ||||||| | ||| ||||||||||||||||||||||||||||| ||   |   || ||||||| |||||||||||| |||| || |||  |||||||| |    
T  5180644 ttcattccactcggtttttcttctttctgttctgattgaagtcgtcggcgtgttcgtcttcagcagagaatctcttcacagagcattcagtttcatcacc 5180743  T
Q  102 actacaagtaattgtattcaaatc---------atatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccact 192  Q
     ||||||| |||   |||||||||         |||||| ||||||| || |||||||||||||||||||   |||||||||||||||   |||||||||    
T  5180744 tctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccact 5180843  T
Q  193 ttgttaccaggttctatacttgatactaccc 223  Q
    |||||||| |||||||| |||||||||||||    
T  5180844 ttgttaccgggttctatgcttgatactaccc 5180874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 5100730 - 5100810
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 82  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5100730 ttcattccactcggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 5100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 5135831 - 5135911
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 82  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5135831 ttcattccactcggtttttcttctttctgttctgattgaagtcatcattgggctcctcttcagtagagaatctcttgacag 5135911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5352699 - 5352803
Alignment:
Q  1 tttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcat 100  Q
    |||||||| |||||||||||||||||||||||||||||||  || ||| ||  |||||||||| |||||||||||||||||||| | || ||||||||||    
T  5352699 tttcattccattcgatttttcttctttctgttctgattgacatcttcagtgtgctcctcttcaatagagaatctcttgacagggtgctcattttcatcat 5352798  T
Q  101 cacta 105  Q
    |||||    
T  5352799 cacta 5352803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 5242512 - 5242610
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| |||||||||  |||||||||||||||||||   |||||||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  5242512 atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactac 5242610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 23127310 - 23127407
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 220  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||| | |  |||||||| ||||||||||||||||  |||||||||||    
T  23127310 atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatacta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 5346324 - 5346229
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatac 218  Q
    ||||||||  ||||||| || ||||||||||||||||||| ||||||||| |||||    ||||||||||||||||||||||||||||||||||||    
T  5346324 atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatac 5346229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 5255984 - 5256214
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 101  Q
    ||||||| | ||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| || ||||   |||  | |||  ||||||||      
T  5255984 ttcattccactcggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttcagtagaaaaactctcttcagaccattcactttcatcacg 5256083  T
Q  102 actacaagtaattgtattcaaat---------catatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccact 192  Q
     ||||||| |||   ||||||||         ||||||| | ||||| || ||||||||||||||||||||||||||  ||||||||    |||||||||    
T  5256084 gctacaagcaatgtgattcaaattttgtgcatcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccact 5256183  T
Q  193 ttgttaccaggttctatacttgatactaccc 223  Q
    |||||||| ||||| |||||||||| |||||    
T  5256184 ttgttacctggttcaatacttgatattaccc 5256214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 5098506 - 5098406
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaa-aatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| |||||||||| |||||| ||||||||||||   ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  5098506 atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac 5098408  T
Q  222 cc 223  Q
    ||    
T  5098407 cc 5098406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 5351695 - 5351598
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 220  Q
    ||||||||| |||||||||  |||||| ||||||||| |||||||||| |||||||||   ||||||||||||||||  |||||||||||||||||||    
T  5351695 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatacta 5351598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 5100822 - 5100918
Alignment:
Q  127 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 223  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccc 5100918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 5135923 - 5136019
Alignment:
Q  127 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 223  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccc 5136019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 5351769 - 5351703
Alignment:
Q  16 tttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 82  Q
    ||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  5351769 tttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacag 5351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 5427195 - 5427097
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| |||||||||  ||||||| |||||| ||||   |||||||||||||||   ||||||| ||||||||||||||||||||||||||||||    
T  5427195 atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactac 5427097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 5334457 - 5334380
Alignment:
Q  146 tcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 223  Q
    ||||||||| ||||||||||||||| |||||||||   ||||||||||||||||||||||||| || |||||||||||    
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccc 5334380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 5155866 - 5155973
Alignment:
Q  18 tttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaattgta 117  Q
    ||||||||||||||| |||||| |||||||| |||  ||| |||||| ||  ||||||||||||| | |||| |||||||||| |||||||| ||||| |    
T  5155866 tttcttctttctgttttgattgcagtcatcaatgggatccccttcagaagctaatctcttgacagagagttcattttcatcattactacaagaaattgca 5155965  T
Q  118 ttcaaatc 125  Q
    ||||||||    
T  5155966 ttcaaatc 5155973  T

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Target: chr6; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 5449022 - 5448807
Alignment:
Q  14 gatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaat 113  Q
    ||||||||||||||||||||||||||||||||||   ||  || ||||||||||||||  |||| | || || ||| ||||||||| | ||||||| |||    
T  5449022 gatttttcttctttctgttctgattgaagtcatctgcgggatcgtcttcagtagagaagttctttagagagcattcattttcatcacctctacaagcaat 5448923  T
Q  114 tgtattcaaatc---------atatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggt 204  Q
        || |||||         |||||| ||||| |||  |||||||| |||| ||||||||||||| |||||||||   | |||||||||||| || |||    
T  5448922 gacgttaaaatcttgtgcatcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggt 5448823  T
Q  205 tctatacttgatacta 220  Q
    ||||||||||||||||    
T  5448822 tctatacttgatacta 5448807  T

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Target: chr6; HSP #26
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 5126629 - 5126727
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||  |||||||| | ||||||||||||||||||| | |||| |||||||| |  || ||| ||||||||||||| ||||||||||||||||||    
T  5126629 atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactac 5126727  T

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Target: chr6; HSP #27
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 5242360 - 5242459
Alignment:
Q  12 tcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagta 111  Q
    ||||||||||||  ||| |||||||||||||||||||   | ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||    
T  5242360 tcgatttttctt--ttccgttctgattgaagtcatcagcaggctcctcttcagtagagaatctcttgacagagcgttcatcttcatcacctctataagta 5242457  T

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Target: chr6; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 5283224 - 5283324
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaa-atgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| ||||||| || |||||||||||||||||||   || ||||||||||| ||| ||||||||||||||||| ||||| |||||||||| |||    
T  5283224 atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatg-acctccactttgttacctggttcgatacttgatattac 5283322  T
Q  222 cc 223  Q
    ||    
T  5283323 cc 5283324  T

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Target: chr6; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 5072692 - 5072779
Alignment:
Q  133 agataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 220  Q
    ||||||| | ||||||| |||||||||||||| ||||||| |||||    ||||||||||| ||||||||| ||||||||||||||||    
T  5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatacta 5072779  T

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Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 5065449 - 5065547
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||  ||||||||||||||| ||||||||| |||| | ||||||||||||| |  ||  |||||||| || |||||||| ||||||||||||||    
T  5065449 atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactac 5065547  T

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Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 5352863 - 5352961
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||| ||||||| ||||||||||||||| ||||||  |||||| ||||||| |   ||||| ||||||| |||||| || ||||||||||||||    
T  5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactac 5352961  T

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Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 2657155 - 2657210
Alignment:
Q  127 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatg 182  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||| || ||||||||    
T  2657155 tatacgagataaattgttgccttcttcacaatgaaatcattctcgaatacaaaatg 2657210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 5124443 - 5124540
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 220  Q
    |||||||| || ||| | |||||||| ||||||||||||    |||| ||||||||||  ||  |||||||| ||||||||||||||||| |||||||    
T  5124443 atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatacta 5124540  T

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Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 5253827 - 5253738
Alignment:
Q  124 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatactt 213  Q
    |||||||  ||||||||||| ||| ||||||||||||||   ||||||||||||| |  || ||||||||| || |||||||| ||||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatactt 5253738  T

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Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 5334498 - 5334453
Alignment:
Q  17 ttttcttctttctgttctgattgaagtcatcactggactcctcttc 62  Q
    |||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  5334498 ttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 5334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5283109 - 5283153
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcat 46  Q
    ||||||| | ||| ||||||||||||||||||||| |||||||||    
T  5283109 ttcattccactcggtttttcttctttctgttctgagtgaagtcat 5283153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 47985393 - 47985491
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactac 47985491  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 48003967 - 48004065
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactac 48004065  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 47994680 - 47994778
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactac 47994778  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 48013252 - 48013350
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactac 48013350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 47985230 - 47985298
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 70  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  47985230 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47985298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 47994517 - 47994585
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 70  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  47994517 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47994585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 48003804 - 48003872
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 70  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  48003804 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48003872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 48013089 - 48013157
Alignment:
Q  2 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 70  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  48013089 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48013157  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 36212942 - 36213018
Alignment:
Q  144 tgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 220  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||||| ||| | |||||||||||||||||||||||    
T  36212942 tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 25569090 - 25569037
Alignment:
Q  168 ctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactac 25569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 4122644 - 4122739
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatac 218  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||  ||||||||| |  || ||||||||||| ||||||||| ||| |||||||    
T  4122644 atcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgatac 4122739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 4132618 - 4132713
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 221  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||| |||||||||    || ||| ||||||| ||||||||| ||| ||||||||||    
T  4132618 atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaa---caatctcgactttgtcaccaggttccatatttgatactac 4132713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 7884155 - 7884199
Alignment:
Q  123 atcatatacaagataaactgttgtcttcttcacaatgaaatcatt 167  Q
    |||||| |||||||||| |||||| |||||||||||||| |||||    
T  7884155 atcatagacaagataaattgttgttttcttcacaatgaattcatt 7884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 106 - 43
Alignment:
Q  154 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 217  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 22583333 - 22583396
Alignment:
Q  154 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 217  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 22583396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  124 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 220  Q
    ||||||| |||||||| |||||| |  ||| |||||||| | | | ||||||||| |  ||||||||||||||| || ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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