View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14293_low_2 (Length: 493)
Name: NF14293_low_2
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14293_low_2 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 479
Target Start/End: Complemental strand, 3572 - 3101
Alignment:
| Q |
14 |
accaaaggcatgtcaaatgatgatcttgatgacgacgacgacgaagatgaatggtttccaagggcagtggaggagtatgaagagtataaccatgctgcaa |
113 |
Q |
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| T |
3572 |
accaaaggcatgtcaaatgatgatcttgatgacgacgacgatgatgatgaatggtttccaagggcagtggaggagtatgaagagtataaccatgctgcaa |
3473 |
T |
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| Q |
114 |
gaactggacaacatcggctacggtcgagtttagtattagaaccatgttttgatgaactacatgcactttctatgccattgaagagttcatttgagagaga |
213 |
Q |
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| T |
3472 |
gaatcggacaacatcggctacggtcgagtttactattagaaccatgttttgatgaactacatgcactttctatgccattgaagagttcatttgagagaga |
3373 |
T |
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| Q |
214 |
taaaggacagcctttaacatatgactgttcttggaatgaagggattgttaatgttgttgggaaaatgggattaagggttgatgatgttgagttaggatga |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3372 |
taaaggacagcctttaacataagactgttcttggaatgaagggattgttaatgttgttgggaaaatgggattaagggttgatgatgttgagttaggatga |
3273 |
T |
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| Q |
314 |
gtgagactcatgtaggaagggaagaagagaatgtagaggaaaaggatcattagatatggaagtgga------agtgataatgacatgatggtgttgaagg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3272 |
gtgagactcatgtaggaagggaagaagagaatgtagaggaaaaggatcatttgatatggaagtggaagtggaagtgataatgacatgatggtgttgaagg |
3173 |
T |
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| Q |
408 |
tctaagatgatgagaatggaaggaaagtgcactttttcttgtgataaagaatcaagagtctaagttatatat |
479 |
Q |
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| T |
3172 |
tctaagatgatgagaatggaaggaaagtgcactttttcttgtgataaagaatcaagagtctaagttatatat |
3101 |
T |
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