View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14293_low_4 (Length: 390)
Name: NF14293_low_4
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14293_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 131 - 275
Target Start/End: Original strand, 38879176 - 38879320
Alignment:
| Q |
131 |
agagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgtttatggacttgttttattatttt |
230 |
Q |
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| T |
38879176 |
agagttatgctatattgtacgaaacaatttgtcgtgcatgccacacgaatgcacacttatctttacaaactctttgtttttggacttgttttattatttt |
38879275 |
T |
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| Q |
231 |
aatattaatcatagcaaataattcttatttcttgtgccaccgcca |
275 |
Q |
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| T |
38879276 |
aatattaatcatagcaaataattcttatttctagtgccaccgcca |
38879320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 38879313 - 38879382
Alignment:
| Q |
306 |
caccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatg |
375 |
Q |
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| T |
38879313 |
caccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatg |
38879382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 26864304 - 26864172
Alignment:
| Q |
239 |
tcatagcaaataattcttatttcttgtgccaccgccaaatcacctctatacttgccgtcatctttgacaccgccattgtcatgttgcatcccattgccat |
338 |
Q |
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| T |
26864304 |
tcatagcaaataattcttatttctagtgccaccgccaaatcacatatatacttgccgtcatctttgacaccaccattgtcatgttgcatcccattgccat |
26864205 |
T |
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| Q |
339 |
ggcttatacaaaaatcatgagagagatcagagc |
371 |
Q |
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| T |
26864204 |
ggcttatacaaaaatcatgagagagatcagagc |
26864172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 26864379 - 26864304
Alignment:
| Q |
132 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26864379 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgt |
26864304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 44634284 - 44634175
Alignment:
| Q |
28 |
taaggtagttaaagaaagatgggggaggtttaatacacatttatttannnnnnnnngacagaaacat-------gtttagatatgctaccaatgtactgt |
120 |
Q |
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| T |
44634284 |
taaggtagttaaagaaagatgggggaggcttaatacacatttattt-tctttttttgacagaaacatcaaacatgtttagatatgctaccaatgtactgt |
44634186 |
T |
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| Q |
121 |
cttaaaattaa |
131 |
Q |
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||||||||||| |
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| T |
44634185 |
cttaaaattaa |
44634175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 290 - 375
Target Start/End: Complemental strand, 25910879 - 25910794
Alignment:
| Q |
290 |
ttgccgtcatctttgacaccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910879 |
ttgccgtcatctttgacaccgccattgtcatgttgcatcccattgccatggcttatacaaaaatcatgagagagatcagagcaatg |
25910794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 25910964 - 25910879
Alignment:
| Q |
132 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgtttatggactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910964 |
gagttatgctatatggtacgaaacaatttgtcgtgcatgccacacgaatgcacacttaactttacaaactctttgtttatggactt |
25910879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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