View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14293_low_5 (Length: 386)
Name: NF14293_low_5
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14293_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 52556712 - 52556888
Alignment:
| Q |
5 |
atgaagctaggttctatgaaagcatgatgat-gnnnnnnnncttcaattatacattacatggttgaccacatcatcaaagagtatgatattacttttgaa |
103 |
Q |
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| T |
52556712 |
atgaagcttggttctatgaaagcatgatgattgttttttttcttcaattatacattacatggttgaccacatcatcaaagagtattatattacttttgaa |
52556811 |
T |
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| Q |
104 |
tttattaagacaaggatgagatggaacgaattttatcattttattaatattagtagtaaacaaaagcatccagcaat |
180 |
Q |
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| T |
52556812 |
tttattaagacaaggatgagatggaacgaattttatcattttattaatattagcagtaaacaaaagcatccagcaat |
52556888 |
T |
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Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 208 - 345
Target Start/End: Original strand, 52556940 - 52557077
Alignment:
| Q |
208 |
caaacataaaaagttaaattgatctagagacagtgccatggccacacgttcgttataaaataggatgtgaggaagagttaagctgcatcaacatagagtg |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52556940 |
caaacataaaaaaataaattgatctagagacagtgccatggccacacgttcgttataaaataggatgtgaggaagagttaagctgcatcaacatagagtg |
52557039 |
T |
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| Q |
308 |
atgaatattcattctcatcattttggaattatggctat |
345 |
Q |
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| T |
52557040 |
atgaatattcattgtcatcattttggaattatggctat |
52557077 |
T |
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