View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14293_low_6 (Length: 345)
Name: NF14293_low_6
Description: NF14293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14293_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 7267106 - 7266783
Alignment:
| Q |
1 |
tatttgctcagacgaagcagtccatgttgcaatgacactagacataaaatacctccgcggctcaatggcggccattctctccgtcctccaacactcctct |
100 |
Q |
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| T |
7267106 |
tatttgctcagacgaagcagtccatgttgcaatgacactagacataaaatacctccgcggctcaatggcggccattctctccgtcctccaacactcctct |
7267007 |
T |
|
| Q |
101 |
tgtccagaaaacaccatcttccacttcatcaccgccgcatcgaaaaccacctccaccgtcacccttaacaccaccctctcaaactcattcccatacttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7267006 |
tgtccagaaaacaccatcttccacttcatcaccgccgcatcgaaaactacctccaccgtcacccttaacaccaccctcttaaactcattcccatacttaa |
7266907 |
T |
|
| Q |
201 |
aattccaaatctaccccttcaacactgaaaccatttcaggtctaatctcaacctcaatacgctctgcactcgatacacctctcaactacgcgcgaaatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7266906 |
aattccaaatctaccccttcaacactgaaaccatttcaggtctaatctcaacctcaatacgctctgcactcgatacacctctcaactacgcgcgaaatta |
7266807 |
T |
|
| Q |
301 |
cctctctaatcttcttccaaactg |
324 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
7266806 |
cctctctaaccttcttccaaactg |
7266783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 6635789 - 6635668
Alignment:
| Q |
5 |
tgctcagacgaagcagtccatgttgcaatgacactagacataaaatacctccgcggctcaatggcggccattctctccgtcctccaacactcctcttgtc |
104 |
Q |
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||||| || |||||||||||||| ||||||||| |||||| || ||| |||| || || ||||| || || ||||| |||||||||||||| || |||| |
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| T |
6635789 |
tgctccgaggaagcagtccatgtggcaatgacattagacacaacatatatccgaggatccatggctgcaatcctctctgtcctccaacactcatcatgtc |
6635690 |
T |
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| Q |
105 |
cagaaaacaccatcttccactt |
126 |
Q |
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|| |||||| |||||| ||||| |
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| T |
6635689 |
cacaaaacatcatctttcactt |
6635668 |
T |
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