View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_high_15 (Length: 254)
Name: NF14294_high_15
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9258772 - 9259017
Alignment:
| Q |
1 |
ccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9258772 |
ccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcgg |
9258871 |
T |
|
| Q |
101 |
aattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggacg |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9258872 |
aattctggttttagacgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggacg |
9258971 |
T |
|
| Q |
201 |
aagaattgtaatttcgatgatttcgtcttcgtgacctttttcatct |
246 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
9258972 |
aagaattgtaatttcgatgatttcgttttcgtgatctttttcatct |
9259017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9268768 - 9269012
Alignment:
| Q |
1 |
ccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcgg |
100 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||| |
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| T |
9268768 |
ccaattggagatttgcatcgttttcgatgccacattcgcgaagactctattctagctgaagctgttttgcttcgtatattaatcgttgatgttcaatcgg |
9268867 |
T |
|
| Q |
101 |
aattctggttttagatgaaatttgttcgagaagcgattcaac--tgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcgga |
198 |
Q |
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| T |
9268868 |
aattttggttttgaatgaaatttgttcgagaagggattcaacttttttttttcgctagaagcacgaatcactaaggtgttactgttcca---catgcgga |
9268964 |
T |
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| Q |
199 |
cgaagaattgtaatttcgatgatttcgtcttcgtgacctttttcatct |
246 |
Q |
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| T |
9268965 |
cgaagaattgtaatttcgatgatttcgtttctgagacctttttcatct |
9269012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9238180 - 9238387
Alignment:
| Q |
1 |
ccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcgg |
100 |
Q |
| |
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||||||||||||| || ||||||||||||||||||| || ||||||||||| | | |||||||||||| | ||| || |||||||||| || ||| || |
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| T |
9238180 |
ccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattcaatagg |
9238279 |
T |
|
| Q |
101 |
aattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggacg |
200 |
Q |
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|||| ||||||| ||||||||||||| ||||| ||||| ||||| | |||||| ||||| |||| |||| ||||||||| |||||||||||||| || |
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| T |
9238280 |
aattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttccacatcatgcgaaca |
9238379 |
T |
|
| Q |
201 |
aagaattg |
208 |
Q |
| |
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|||||||| |
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| T |
9238380 |
aagaattg |
9238387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9250698 - 9250905
Alignment:
| Q |
1 |
ccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcgg |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| || ||||||||||| | | |||||||||||| | ||| || |||||||||| || ||| || |
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| T |
9250698 |
ccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattcaatagg |
9250797 |
T |
|
| Q |
101 |
aattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggacg |
200 |
Q |
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|||| ||||||| ||||||||||||| ||||| ||||| ||||| | |||||| ||||| |||| |||| ||||||||| |||||||||||||| || |
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| T |
9250798 |
aattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttccacatcatgcgaaca |
9250897 |
T |
|
| Q |
201 |
aagaattg |
208 |
Q |
| |
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|||||||| |
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| T |
9250898 |
aagaattg |
9250905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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