View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14294_high_16 (Length: 253)
Name: NF14294_high_16
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9258793 - 9258559
Alignment:
| Q |
1 |
aacgatgcaaatcttcaattggttggtcgcttgaggagtatagcgtgtcctaaagtgtggaaagccacacaatatattgtttctttgattctcaggctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9258793 |
aacgatgcaaatcttcaattggttggtcgcttgaggagtatagcgtgtcctaaagtgtggaaagccacacaatatattgtttctttgattctcaggctct |
9258694 |
T |
|
| Q |
101 |
gtagaggtgaattggtgattgatgcttcgagaattattgatgatcaccttacatattacatcaatgattctgaatatttttctgttttcatgtttatgga |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9258693 |
gtagaggtgaattggtgattggtgcttcgagaattattgatgatcaccttacatattacatcaatgattctgaatatttttctgttttcatgtttatgga |
9258594 |
T |
|
| Q |
201 |
aattccttcactgttggtagctctttatatgtcac |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9258593 |
aattccttcactgttggtagctctttatatgtcac |
9258559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9268789 - 9268562
Alignment:
| Q |
1 |
aacgatgcaaatcttcaattggttggtcgcttgaggagtatagcgtgtcctaaagtgtggaaagccacacaatatattgtttctttgattctcaggctct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
9268789 |
aacgatgcaaatctccaattggttggacgattgaggagtatagtttgtcctaaagtgtggaaagccaaacattatattgtttctttgattctcaggcttt |
9268690 |
T |
|
| Q |
101 |
gtagaggtgaattggtgattgatgcttcgagaattattgatgatcaccttacatattacatcaatgattctgaatatttttctgttttcatgtttatgga |
200 |
Q |
| |
|
||| |||| ||| |||||||| |||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9268689 |
gtacaggtaaatcggtgattggtgcttcgacaattattgatgattgctttacaaattacatcaatgattctgaatatttttctgtttccatgtttatgga |
9268590 |
T |
|
| Q |
201 |
aattccttcactgttggtagctctttat |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
9268589 |
aattccttcactgttggtagatctttat |
9268562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9238201 - 9237969
Alignment:
| Q |
1 |
aacgatgcaaatcttcaattggttggtcgcttgaggagtatagcgtgtcctaaagtgtggaaagccacacaatatattgtttctttgattctcaggctct |
100 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||||| | || || ||||||||| | || | |||||||||| ||||||||| |||| |
|
|
| T |
9238201 |
aacgacgccaatcttcaattggttggtcaattgaggagtatagggcgttctgtagtgtggaattctgcagatgatattgtttcaatgattctcaacctct |
9238102 |
T |
|
| Q |
101 |
gtagaggtgaattggtgattgatgcttcgagaattattgatgatcaccttacatattacatcaatgattctgaatatttttctgttttcatgtttatgga |
200 |
Q |
| |
|
||||||| |||| | ||| || ||| || | |||||| || ||||| || || | || || ||| ||| ||||||||||| | |||||| ||| ||| | |
|
|
| T |
9238101 |
gtagaggcgaatcgctgaatggtgcctccatgattattcataatcactttgcaaagtatatgaataattttgaatatttttattttttcaagttaatgaa |
9238002 |
T |
|
| Q |
201 |
aattccttcactgttggtagctctttatatgtc |
233 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9238001 |
aattccttctctgttggtagcactttatatgtc |
9237969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 9250719 - 9250592
Alignment:
| Q |
1 |
aacgatgcaaatcttcaattggttggtcgcttgaggagtatagcgtgtcctaaagtgtggaaagccacacaatatattgtttctttgattctcaggctct |
100 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||||| | || || ||||||||| | ||| | |||||||||| ||||||||| |||| |
|
|
| T |
9250719 |
aacgacgccaatcttcaattggttggtcaattgaggagtatagtgcgttctgtagtgtggaattctacagatgatattgtttcaatgattctcaaactct |
9250620 |
T |
|
| Q |
101 |
gtagaggtgaattggtgattgatgcttc |
128 |
Q |
| |
|
||||||||||| ||||||| |||||| |
|
|
| T |
9250619 |
gtagaggtgaaccagtgattggtgcttc |
9250592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University