View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_high_20 (Length: 219)
Name: NF14294_high_20
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 8028616 - 8028806
Alignment:
| Q |
13 |
ataaataagctatagagaaagattcctcnnnnnnnnnnnnnctatagagaatgagtgaggtggggaagagagaaacaaggatgaaagtggaacaagtact |
112 |
Q |
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| T |
8028616 |
ataaataagctatagagaaagattcctcaaaaaacaaaaaactatagagaatgagtgaggtggggaagagagaaacaaggatgaaagtggaacaagtact |
8028715 |
T |
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| Q |
113 |
ccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggtaaaatatcacacgtaaaatatcaattcatattac |
203 |
Q |
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| T |
8028716 |
ccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggtaaaatatcacacgtaaaatatcaattcatattac |
8028806 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 32629116 - 32629054
Alignment:
| Q |
108 |
gtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
170 |
Q |
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| T |
32629116 |
gtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
32629054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 32710179 - 32710113
Alignment:
| Q |
104 |
acaagtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
170 |
Q |
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| T |
32710179 |
acaagtattgcacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggta |
32710113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 27737676 - 27737620
Alignment:
| Q |
114 |
cacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
170 |
Q |
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| T |
27737676 |
cacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggta |
27737620 |
T |
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